Jatropha Genome Database

JcCA0251661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251661.10 - phase: 1 /partial
         (179 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000488 DNA binding protein, putative                           306   3e-84

>29727.m000488 DNA binding protein, putative
          Length = 1374

 Score =  306 bits (785), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/177 (83%), Positives = 159/177 (89%)

Query: 3   PQTPVMSGVGSPASVSNISVPLNANSPSVGTPPMADQTMLERLSKIEMVTIRHQLNSKKN 62
           P+TPVMSGVGSPASVSN+SVPLNANSPSVGTP M DQTMLER SKIEMVT+RHQLN KKN
Sbjct: 643 PKTPVMSGVGSPASVSNMSVPLNANSPSVGTPTMVDQTMLERFSKIEMVTVRHQLNCKKN 702

Query: 63  KVDDFPVRKPNTYSHQNVMACLSNLPNNEDLKDDASARQLFKSVVGGSMNVLKIRIINFL 122
           K DD+PVRK NTYS QN+M CLSNLPN ED KDDASA QL KS+VGGSMNV K+RIINF+
Sbjct: 703 KADDYPVRKSNTYSPQNLMVCLSNLPNTEDSKDDASAGQLSKSIVGGSMNVCKMRIINFM 762

Query: 123 LADRVIQGNAVSFVPRSRTRMILSEKPNDGTVAMHYGEPEDGDPLSVEDYLPSLPNT 179
           LADRV+QGN VSFVPR RTRMI+SEKPNDGTVAM YGE EDGD LSVE+YLP+LPNT
Sbjct: 763 LADRVVQGNVVSFVPRRRTRMIMSEKPNDGTVAMQYGEAEDGDFLSVEEYLPTLPNT 819