Jatropha Genome Database

JcCA0251221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251221.10 - phase: 1 /pseudo/partial
         (239 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004543 DNA binding protein, putative                           307   3e-84
29696.m000106 actin binding protein, putative                         286   8e-78
30138.m004035 conserved hypothetical protein                          240   5e-64
29827.m002589 conserved hypothetical protein                           96   1e-20
29827.m002590 conserved hypothetical protein                           69   2e-12

>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score =  307 bits (786), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/189 (82%), Positives = 167/189 (88%)

Query: 34   KHLMCSPWMPGLHIYNSSLLGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPE 93
            K +M +    G  + + +  GSA+GFRLDSLLKLTDTRA NNKMTLMHYLCKVL+EKLPE
Sbjct: 1045 KRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRAINNKMTLMHYLCKVLAEKLPE 1104

Query: 94   LLDFPKDLMNLEAATKIQLKYLAEEMQAISKGLEKVVQELTASENDGQVSESFCKILKEF 153
            LLDF KDLM+LEAATKIQLKYLAEEMQAISKGLEKV+QELTASENDG VSE FCK LK F
Sbjct: 1105 LLDFQKDLMSLEAATKIQLKYLAEEMQAISKGLEKVLQELTASENDGHVSEYFCKSLKVF 1164

Query: 154  LSSAESEVRSLALLYSTVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFSRAHEENC 213
            LSSAESEVRSLA LYSTVGRNADALALYFGEDPARCPFEQVVSTLLNFV+MF RAH+ENC
Sbjct: 1165 LSSAESEVRSLASLYSTVGRNADALALYFGEDPARCPFEQVVSTLLNFVKMFIRAHDENC 1224

Query: 214  KQLEFERKK 222
            KQLE  RK+
Sbjct: 1225 KQLELVRKR 1233


>29696.m000106 actin binding protein, putative
          Length = 1191

 Score =  286 bits (731), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 160/178 (89%)

Query: 54   GSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFPKDLMNLEAATKIQLK 113
            GSAIGFRLDSLLKLTDTRARNNK+TLMHYLCKVL++KLPELLDF KDL +LE+A+KIQLK
Sbjct: 994  GSAIGFRLDSLLKLTDTRARNNKITLMHYLCKVLADKLPELLDFSKDLASLESASKIQLK 1053

Query: 114  YLAEEMQAISKGLEKVVQELTASENDGQVSESFCKILKEFLSSAESEVRSLALLYSTVGR 173
            +LAEEMQAISKGLEK+VQEL+ SE+DG +S++F KILKEFL  AE+EVRSLA LYS VGR
Sbjct: 1054 FLAEEMQAISKGLEKIVQELSTSESDGPISDNFRKILKEFLRFAEAEVRSLASLYSGVGR 1113

Query: 174  NADALALYFGEDPARCPFEQVVSTLLNFVRMFSRAHEENCKQLEFERKKQRGMQKMKS 231
            N DAL LYFGEDPARCPFEQVVSTLLNFV++F++AHEENCKQLE E KK    +K K+
Sbjct: 1114 NVDALILYFGEDPARCPFEQVVSTLLNFVKLFNKAHEENCKQLEIETKKAAESEKSKT 1171


>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score =  240 bits (612), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 140/173 (80%)

Query: 44   GLHIYNSSLLGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFPKDLMN 103
            G  +   +  GSAIGF+LDSLLKLTDTRA N+KMTLMH++C+ L+   P LL+F  D ++
Sbjct: 1350 GNTLNQGTARGSAIGFKLDSLLKLTDTRASNSKMTLMHFVCRSLAATSPALLNFHLDFVS 1409

Query: 104  LEAATKIQLKYLAEEMQAISKGLEKVVQELTASENDGQVSESFCKILKEFLSSAESEVRS 163
            LEAATKIQLK LAEEMQAI KGLEKV QEL ASENDG VS  F K LKEF+S AE+EV+S
Sbjct: 1410 LEAATKIQLKSLAEEMQAIIKGLEKVKQELAASENDGPVSGVFRKTLKEFVSVAETEVKS 1469

Query: 164  LALLYSTVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFSRAHEENCKQL 216
            +  LY+ VGRNADALA YFGEDPARCPFEQV +TLLNFVR+F +AHEEN KQ+
Sbjct: 1470 VTNLYAVVGRNADALAQYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQV 1522


>29827.m002589 conserved hypothetical protein
          Length = 124

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 149 ILKEFLSSAESEVRSLALLYSTVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFSRA 208
           +LK FL +AE+EVRSL  LY+ VGRNAD+L+ YFGEDPARCPFEQV   L+ FV+MF +A
Sbjct: 14  VLKNFLDTAEAEVRSLISLYAEVGRNADSLSQYFGEDPARCPFEQVTQILVLFVKMFKKA 73

Query: 209 HEENCKQ 215
            +EN +Q
Sbjct: 74  RDENERQ 80


>29827.m002590 conserved hypothetical protein
          Length = 231

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 34  KHLMCSPWMPGLHIYNSSLLGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKV 86
           + +M +    G  +   +  GSA+GF+LDSLLKL+DTRARNNKMTLMHYLCK+
Sbjct: 171 RQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKL 223