Jatropha Genome Database

JcCA0250521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0250521.10 + phase: 0 
         (119 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004703 plant mitotic spindle assembly checkpoint protein ...   246   2e-66

>29929.m004703 plant mitotic spindle assembly checkpoint protein
           mad2, putative
          Length = 207

 Score =  246 bits (627), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/119 (98%), Positives = 118/119 (99%)

Query: 1   MSKVTNEVLERWNFSIETDSEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEA 60
           MSK TNEVLERWNFSIETDSEVV+KGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEA
Sbjct: 89  MSKATNEVLERWNFSIETDSEVVQKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEA 148

Query: 61  CVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ 119
           CVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Sbjct: 149 CVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ 207