Jatropha Genome Database

JcCA0249841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0249841.10 + phase: 0 /partial
         (292 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29683.m000479 Rop guanine nucleotide exchange factor, putative        474   e-134
28934.m000056 Rop guanine nucleotide exchange factor, putative        216   1e-56
30143.m001222 Rop guanine nucleotide exchange factor, putative        204   5e-53
30170.m014310 Rop guanine nucleotide exchange factor, putative        178   3e-45
30174.m008604 Rop guanine nucleotide exchange factor, putative        163   9e-41
30146.m003571 conserved hypothetical protein                          156   1e-38
29827.m002639 Rop guanine nucleotide exchange factor, putative        136   1e-32
29912.m005502 hypothetical protein                                    108   3e-24

>29683.m000479 Rop guanine nucleotide exchange factor, putative
          Length = 580

 Score =  474 bits (1219), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/261 (86%), Positives = 242/261 (92%), Gaps = 1/261 (0%)

Query: 33  GKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPTNN 92
           GK CLGDIIYRY+TAEQF PECLLDCLDLSTEHHTLE+ANRIEAA+HVWKQK+Q+K T++
Sbjct: 320 GKACLGDIIYRYITAEQFSPECLLDCLDLSTEHHTLEIANRIEAALHVWKQKDQRKHTSH 379

Query: 93  TKVKHSSWGVKVKGLVADTK-KNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKDV 151
           TK +H+SWG KVKGLVADTK KN F+A RAETLLQSLRLRFPGLPQTALDM+KIQYNKDV
Sbjct: 380 TKARHTSWGGKVKGLVADTKRKNTFLAQRAETLLQSLRLRFPGLPQTALDMHKIQYNKDV 439

Query: 152 GQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAESMSLFNRNGLGGLPIQKRMS 211
           GQSILESYSRVMESLAFNIMARIDDV++VDDA+ RCAAAESMSLFNR+GLGG PIQKRMS
Sbjct: 440 GQSILESYSRVMESLAFNIMARIDDVIYVDDATNRCAAAESMSLFNRSGLGGHPIQKRMS 499

Query: 212 PSPFSIQHSPFASPFATPTFCSSTPVAGSPARAPSSLNRNNVKEAIDQKLEKPYAADFEK 271
           PSPFSIQ SPF SPFATPTFCSSTPVAGSP RAPSS+  NN+KEA DQK EKP  ADFEK
Sbjct: 500 PSPFSIQQSPFTSPFATPTFCSSTPVAGSPGRAPSSIKMNNIKEATDQKFEKPCPADFEK 559

Query: 272 VWSYTGNLSSRRVSGDAPERD 292
           VWSYTGNLSSRRVSGDAPERD
Sbjct: 560 VWSYTGNLSSRRVSGDAPERD 580


>28934.m000056 Rop guanine nucleotide exchange factor, putative
          Length = 673

 Score =  216 bits (550), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/222 (50%), Positives = 151/222 (68%), Gaps = 13/222 (5%)

Query: 31  QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
           ++GK  LGD+IYRY++++QF PECLLDCLDLS+EH  +E+ANR+EAA +VW+++   KP 
Sbjct: 425 KNGKASLGDLIYRYISSDQFLPECLLDCLDLSSEHQAIELANRVEAATYVWRKRTNSKPA 484

Query: 91  NNT--KVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYN 148
           NNT      SSW + VK L+ D  K   +A RAE+LL  L+ RFPGLPQT LDM+KIQYN
Sbjct: 485 NNTTRSGSRSSWEL-VKELMTDADKRDLLADRAESLLLCLKQRFPGLPQTTLDMSKIQYN 543

Query: 149 KDVGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAESMSLFNRNGLGGLPIQK 208
           KDVG+SILESYSRV+ESLAFNI+ARIDD+L+VDD +K      S+S  +      + I  
Sbjct: 544 KDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKHSDQFSSISKVSVIAHKSVTI-- 601

Query: 209 RMSPSPFSIQHSPFASPFATPTFCSS---TPVAGSPARAPSS 247
              P    +  +P+ + + TP+F      +PV G   R+P S
Sbjct: 602 ---PYSVPVTSTPYKTAYTTPSFSPGHLISPVKGD--RSPIS 638


>30143.m001222 Rop guanine nucleotide exchange factor, putative
          Length = 590

 Score =  204 bits (518), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/265 (43%), Positives = 163/265 (61%), Gaps = 14/265 (5%)

Query: 31  QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
           ++G+ CLGD+IYRY+T++QF  ECLLD LDLSTEH  L+ ANR+E+A++VW+++   KP 
Sbjct: 302 KNGRACLGDLIYRYITSDQFSSECLLDFLDLSTEHVALDTANRVESAIYVWRRRAHSKPQ 361

Query: 91  --NNTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYN 148
              N     SSW + VK  + D  K   +A RAE+LL SL+ RFP L QT LD +KIQ+N
Sbjct: 362 VYPNRSTARSSWDM-VKDFMVDGDKRELLAERAESLLLSLKQRFPSLSQTTLDTSKIQFN 420

Query: 149 KDVGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAESMSLFNRNGLGGLPIQK 208
           KDVG+SILESYSR++ESLAFNI+ARIDD+L+VDD +K     +  +      +  +  +K
Sbjct: 421 KDVGKSILESYSRILESLAFNIVARIDDLLYVDDLTKHSDKLQVST------VSVIAHKK 474

Query: 209 RMSPSPFSIQHSPFASPFATPTFCSSTPVAGSPARAPSSLNRNNVKEAIDQKLEKPYAAD 268
              P    +  +P+ + F+TP+F S  P+  SPAR   +    N   A      KP+   
Sbjct: 475 VTIPYSVPVSGTPYRTTFSTPSF-SPAPLI-SPARGERTPFLPNAATAATNNSNKPHRRG 532

Query: 269 F---EKVWSYTGNLSSRRVSGDAPE 290
           F     + +Y G  S  R+ G++ E
Sbjct: 533 FGVKRVLTNYLGVDSKPRICGNSTE 557


>30170.m014310 Rop guanine nucleotide exchange factor, putative
          Length = 523

 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 114/150 (76%), Gaps = 3/150 (2%)

Query: 74  IEAAVHVWKQKEQKKPTNNTKV-KHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRF 132
           IEAA H+W+++  K      +  + S+W  +VKG V + ++N  +A RAETLL SLRLRF
Sbjct: 329 IEAAAHIWRKRYLKGYKAQARAQRKSTWRGRVKGFVGEVERNKLLARRAETLLHSLRLRF 388

Query: 133 PGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDASKRCAAAES 192
           P LPQT LD  KIQYNKDVG +I+ESYSRVMESLA+NI+ARI D+L+VDDA+K+ AAAES
Sbjct: 389 PALPQTTLDSYKIQYNKDVGHAIIESYSRVMESLAYNILARIGDLLYVDDATKQRAAAES 448

Query: 193 MSLFNRNGLGG--LPIQKRMSPSPFSIQHS 220
            SL+++  LGG  L  Q+++SPSPFS QHS
Sbjct: 449 TSLYDQERLGGGALSKQRQISPSPFSFQHS 478


>30174.m008604 Rop guanine nucleotide exchange factor, putative
          Length = 471

 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 119/161 (73%), Gaps = 11/161 (6%)

Query: 25  FLCNHNQSGKTCLGDIIYRYL-TAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQ 83
           ++ +  +SGK  LGDIIYRY+ T ++F P+ +L+CL+L++EH  LE+A+R+EA+++ W++
Sbjct: 310 YMASLPKSGKASLGDIIYRYMCTTDKFSPDNVLNCLNLASEHEALELADRVEASMYTWRR 369

Query: 84  KEQKKPTNNTKVKHSSWGVKVKGLVAD---TKKNHFMAHRAETLLQSLRLRFPGLPQTAL 140
           K     +       SSWG+ VK  ++D   T KNH +A RAE+LL  L+ R+P L QT+L
Sbjct: 370 KACMSHSK------SSWGM-VKEFMSDLDRTDKNHVLAERAESLLFCLKQRYPELSQTSL 422

Query: 141 DMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVD 181
           D  KIQYN+DVGQ+ILESYSRV+E LAFN++A I+DVLFVD
Sbjct: 423 DTCKIQYNRDVGQAILESYSRVLEGLAFNLVAWIEDVLFVD 463


>30146.m003571 conserved hypothetical protein
          Length = 554

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 104/151 (68%), Gaps = 11/151 (7%)

Query: 31  QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
           ++G+  LGD IYR +T E F P+  L  +DLS+EH  L++ NRIEA++ +WK+K      
Sbjct: 311 KNGRASLGDSIYRSITVEFFDPDQFLSTMDLSSEHKILDLKNRIEASIVIWKRK------ 364

Query: 91  NNTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKD 150
            N K   S WG  V       +K      RAET+L  L+ RFPG+PQ++LD++KIQYN+D
Sbjct: 365 MNQKDGKSGWGSAVS-----LEKRELFEERAETILLILKQRFPGIPQSSLDISKIQYNRD 419

Query: 151 VGQSILESYSRVMESLAFNIMARIDDVLFVD 181
           VGQ+ILESYSR++ESLA+ +M+RI+DVL+ D
Sbjct: 420 VGQAILESYSRILESLAYTVMSRIEDVLYAD 450


>29827.m002639 Rop guanine nucleotide exchange factor, putative
          Length = 526

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 104/154 (67%), Gaps = 3/154 (1%)

Query: 31  QSGKTCLGDIIYRYLTAEQFKPECLLDCLDLSTEHHTLEVANRIEAAVHVWKQKEQKKPT 90
           +SGKT LG+ +Y+ LT E    E +L+ LDL +EH  +EV N++EAA+  WKQK   + +
Sbjct: 297 KSGKTNLGEELYKILTTESKTAEDMLNSLDLKSEHSAIEVINKLEAALFAWKQKITAQIS 356

Query: 91  NNTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKD 150
             + V+ +SW   VK  +++  K   +  RAE LLQ ++ R+P LPQT L+  KIQY KD
Sbjct: 357 GKSPVR-TSWSF-VKDPMSEFDKTESLLDRAEALLQQVKARYPNLPQTFLEATKIQYGKD 414

Query: 151 VGQSILESYSRVMESLAFNIMARIDDVLFVDDAS 184
           VG SILE+YSRV+ +LAF+I+ RI D+L  +DAS
Sbjct: 415 VGHSILEAYSRVLGNLAFSILCRIGDIL-QEDAS 447


>29912.m005502 hypothetical protein
          Length = 186

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%), Gaps = 5/90 (5%)

Query: 92  NTKVKHSSWGVKVKGLVADTKKNHFMAHRAETLLQSLRLRFPGLPQTALDMNKIQYNKDV 151
           N K   SSWG  V       +K      RAET+L  L+ RFPGLPQ+ALD++KIQYNKDV
Sbjct: 2   NQKDGKSSWGSGVS-----LEKRELFEERAETILLILKQRFPGLPQSALDISKIQYNKDV 56

Query: 152 GQSILESYSRVMESLAFNIMARIDDVLFVD 181
           GQ+ILESYSR++ESLAF +++RI+DVL+ D
Sbjct: 57  GQAILESYSRIIESLAFTVLSRIEDVLYAD 86