Jatropha Genome Database

JcCA0247421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247421.10 + phase: 1 /partial
         (65 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001422 DNA-damage-inducible protein f, putative                 61   1e-10
30122.m000355 DNA-damage-inducible protein f, putative                 56   3e-09

>29830.m001422 DNA-damage-inducible protein f, putative
          Length = 447

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 24  GLCLFMGMRTIAGYMRLLSRNGPWWFLQDDID 55
           GL LFMG+RT+AGYMRL+S+ GPWWFL DDI+
Sbjct: 416 GLTLFMGLRTVAGYMRLVSKKGPWWFLLDDIN 447


>30122.m000355 DNA-damage-inducible protein f, putative
          Length = 605

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/31 (67%), Positives = 27/31 (87%)

Query: 24  GLCLFMGMRTIAGYMRLLSRNGPWWFLQDDI 54
           GL LFMG+RT AGY+R+LS++GPWWFL  D+
Sbjct: 552 GLALFMGLRTAAGYIRILSKSGPWWFLHKDL 582