Jatropha Genome Database

JcCA0247261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247261.10 + phase: 0 /pseudo/partial
         (642 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011225 conserved hypothetical protein                          518   e-147
30204.m001824 conserved hypothetical protein                           70   4e-12
27917.m000090 conserved hypothetical protein                           63   4e-10
30174.m008606 conserved hypothetical protein                           61   2e-09
29846.m000187 conserved hypothetical protein                           53   4e-07

>30190.m011225 conserved hypothetical protein
          Length = 942

 Score =  518 bits (1334), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 330/642 (51%), Positives = 401/642 (62%), Gaps = 46/642 (7%)

Query: 29  DGANKKSAMVDSGYGRVKKITGEDVSIEQEIKKKITTAKVENVQSDSELVDDRSRNHRKA 88
           D   +KS  VDSG  +  KI GEDVSI+Q++KKKITTAKVE VQS SELV D SRN RKA
Sbjct: 111 DEVEEKSLAVDSGNLKKNKIKGEDVSIKQQMKKKITTAKVEYVQSTSELVHDLSRNQRKA 170

Query: 89  PKSQR-SRRLPIYGCYDVSTVDHGEIPHQNLAGSDRSSKSIDSVVSAEV---QVHT-NE- 142
            K+ R +RRLPIYGCYDVSTV +     Q+LA  DRSSKS+DS V+AEV   QV   NE 
Sbjct: 171 TKTARKARRLPIYGCYDVSTVGNINSTDQSLA--DRSSKSLDSAVTAEVLPNQVSAKNEG 228

Query: 143 -------NCMHHERPNEINLQVNMNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKI 195
                  N +  ++ NEINLQVNM++ATEAFINQKLIDGKHL   G SHQSK+FLDAL+I
Sbjct: 229 DGICRSTNTVQCDQFNEINLQVNMSKATEAFINQKLIDGKHLCGGGVSHQSKHFLDALEI 288

Query: 196 LNSNKDLFIKLLQDPNSLLVKHIEDLRDSQTKKLQNKSFARGGLSECQTRNTRKCNL--L 253
           LNSNKDLFIKLLQDPNSLLVKHIEDLRD Q K  Q++ FA+  + E QT N R+ NL   
Sbjct: 289 LNSNKDLFIKLLQDPNSLLVKHIEDLRDCQVKDQQSEPFAK-AVPEHQTINARESNLSKT 347

Query: 254 METGDFQPLEKIVVFRPSSKSLQNHADRTSNDSPQIHYSLRSVHQSVKPIRFPFKQMKRT 313
            E    QP E IVV RP         +R S+DS QIH SLR+V QSVKP  FPF+Q+KR 
Sbjct: 348 KEISVHQPFENIVVLRP---------NRISHDS-QIHCSLRNVQQSVKPAFFPFEQIKRK 397

Query: 314 LMHAIGVSRKEQQL-LTDNLLHDKSVH--GFEGGQCSKEAVAGSIKGLSPNEASSDFERM 370
           LM  IG+ RKE+QL LTD  +H KS H  GF+G  C K          SP +AS DF  +
Sbjct: 398 LMQTIGIRRKEKQLMLTDGAVHHKSTHDSGFDG--CGKRTGVKIFTTNSPYKASYDFGGI 455

Query: 371 TKSSMDVNRKDQRDKLGQFDSVVRDEVXXXXXXXXXXXXXXTIRHPKRNEHFVNIE---- 426
           T SS  + RKD+ +K+ +FD  + +E               T+RHP+RN+H  N++    
Sbjct: 456 TTSSTTIKRKDRMNKVNEFDPGISEEAASANESGHEKTCLSTLRHPERNKHDENVKSRIN 515

Query: 427 -TEFKNENANLPKKQKVKSYDVISSLLEYDLFPEVSRR-TRKPEVVSQQMRFSSYYSRHT 484
            +E +N N N  KKQ+ KS D ISS+ EYD FP VS R TR+ + VS QMRFS++ S  T
Sbjct: 516 ISELRNGNKNFLKKQRAKSGDAISSVREYDFFPTVSSRGTREHDSVSPQMRFSAHSSHPT 575

Query: 485 VNEDNWRSQEEKENSCSSPVRQNVE----AVCGTQMQKHEMRRKISSNPFPDDKEQQSIS 540
            ++ N  +Q+E + SC SP RQN E    AV   Q+Q +E   KIS N   D +E   IS
Sbjct: 576 GDDSNRMNQKEYKKSCLSPPRQNQEAPPWAVNKKQLQTYE---KISDNILYDVQEHIDIS 632

Query: 541 SLNNDMSHIEKTCGEKSEEIAXXXXXXXXXXXXNNCVNQSIKTVDGCEENGSLNFSREDS 600
           S NND++ IE    E S+EI+            N+ VNQS + +D CE N  L FSR DS
Sbjct: 633 SSNNDLTEIETKYIENSKEISSSVVVSKPDGSCNDDVNQSTEALDACERNIPLVFSRMDS 692

Query: 601 PVKNQXXXXXXXXXXXXPLNNQRFGAFDMIKQNTEQTSPVSV 642
           PV+NQ            PLN+   G FD IK N EQ SPVSV
Sbjct: 693 PVENQTSTIPVDDYSSSPLNSWSVGEFDRIKDNVEQPSPVSV 734


>30204.m001824 conserved hypothetical protein
          Length = 990

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 12/87 (13%)

Query: 146 HHERPNEINLQVNMNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKILNSNKDLFIK 205
           HHE PNE  +           + QK ++ K L  D    QSK F DAL++L+SN+DLF+K
Sbjct: 204 HHESPNERKM---------TLVRQKFMEAKRLATDEKGRQSKEFQDALEVLSSNRDLFLK 254

Query: 206 LLQDPNSLLVKHIEDLRDS---QTKKL 229
            LQ+PNS+   H+ D++ +   +TK++
Sbjct: 255 FLQEPNSMFSPHLYDMQSTSPPETKRI 281


>27917.m000090 conserved hypothetical protein
          Length = 779

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query: 159 MNEATEAFINQKLIDGKHLIADGASHQSKNFLDALKILNSNKDLFIKLLQDPNSLLVKHI 218
           + EA  AF+ QK +D   L  D   H SK F DA+  L+SNKDL +K L+ P+SL  +H+
Sbjct: 125 LTEAEMAFVKQKFLDVTRLSTDEKFHDSKEFHDAVDDLDSNKDLLLKFLEQPDSLFKRHL 184

Query: 219 EDLR 222
            DLR
Sbjct: 185 HDLR 188


>30174.m008606 conserved hypothetical protein
          Length = 999

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 34/179 (18%)

Query: 174 GKHLIADGASHQSKNFLDALKILNSNKDLFIKLLQDPNSLLVKHIEDLRDSQTKKLQ-NK 232
           GKH   D   H SK   DA+KIL+S+++L +KLLQ P SL+VK+IE+L ++Q +K + +K
Sbjct: 279 GKHGAVDEDIHPSKELKDAIKILSSDEELSMKLLQGPKSLMVKYIENLWNAQVEKDEVSK 338

Query: 233 SFARGGLSECQTRNTRKCNLLMETGDFQPLEKIVVFRPSSKSLQ----NHADRTSN---- 284
                 LSE + R+ ++ + ++ +   +       FR  +KSL+    N A + SN    
Sbjct: 339 PLVGSNLSEQEIRDLKQTDEVVHSKQRK------FFRRKAKSLEKTPSNKATQASNKIVI 392

Query: 285 --------DSPQIHYSLRSVHQSVKPIR-----------FPFKQMKRTLMHAIGVSRKE 324
                   + P+   S+    +S   IR           F   ++KR L  A+G  + E
Sbjct: 393 LKPGPALLEKPETEGSIGPAPESQPFIRYKGPDERVGSYFFLSEIKRKLKQAMGKEQPE 451


>29846.m000187 conserved hypothetical protein
          Length = 843

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query: 168 NQKLIDGKHLIADGASHQSKNFLDALKILNSNKDLFIKLLQDPNSLLVKHIEDLRDSQTK 227
           NQ L+  + L AD ++ QS  F+DAL I+N NK+ F+K+LQ+P S    H    R   +K
Sbjct: 233 NQDLVHAQELNADASTWQSNEFMDALDIINLNKEFFMKVLQEPGSPFAHHFHSRRALSSK 292