Jatropha Genome Database

JcCA0246931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0246931.20 + phase: 0 /TE
         (478 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011080 conserved hypothetical protein                           73   3e-13

>30190.m011080 conserved hypothetical protein
          Length = 101

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%)

Query: 2  ASSSMSLSPPHFNGENYHVWAVKMRAYFKGLGLWQYVEENRVSLPLNQNPTLQQIRQHEE 61
          A+  + + PP   G+NY  WAVKM+ Y +   LW +VE +    P   + T  +IR    
Sbjct: 6  ANGVVIIPPPILTGDNYSKWAVKMQCYLQAFDLWNFVEADTEPTPFTDDATHAKIRHFNA 65

Query: 62 EVAKAPKALSYIYAAVADPIFTKIMTCET 90
          E A+  KA + I++AV+D IF KI+ C T
Sbjct: 66 EKARKFKAKTCIHSAVSDVIFDKIICCNT 94