Jatropha Genome Database
- JcCA0246841.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0246841.10 + phase: 0 /pseudo/partial
(110 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29693.m002039 mads box protein, putative 98 8e-22
28830.m000229 mads box protein, putative 76 4e-15
29613.m000367 mads box protein, putative 67 2e-12
29693.m002042 mads box protein, putative 67 2e-12
29693.m002041 mads box protein, putative 65 5e-12
27866.m000233 mads box protein, putative 64 1e-11
30099.m001672 mads box protein, putative 63 2e-11
30099.m001671 mads box protein, putative 63 3e-11
29838.m001672 mads box protein, putative 62 6e-11
29596.m000699 mads box protein, putative 62 8e-11
28348.m000077 mads box protein, putative 60 2e-10
29838.m001690 mads box protein, putative 60 3e-10
30221.m002218 mads box protein, putative 58 9e-10
29782.m000119 Floral homeotic protein DEFICIENS, putative 58 1e-09
30138.m003939 mads box protein, putative 58 1e-09
29804.m001536 mads box protein, putative 57 1e-09
30174.m008934 mads box protein, putative 56 4e-09
29907.m000663 mads box protein, putative 55 5e-09
29648.m001978 mads box protein, putative 55 5e-09
30147.m014133 mads box protein, putative 55 5e-09
29908.m005982 mads box protein, putative 55 9e-09
30170.m013776 mads box protein, putative 54 1e-08
30138.m004061 mads box protein, putative 53 3e-08
29739.m003627 mads box protein, putative 52 4e-08
29813.m001508 mads box protein, putative 52 8e-08
29653.m000299 mads box protein, putative 45 5e-06
>29693.m002039 mads box protein, putative
Length = 172
Score = 98.2 bits (243), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 51/64 (79%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEM 60
MGR+KIEM MVKD +SRQVTF K R GLFKKANEL +LCA QIAIVVFS GGKPFS
Sbjct: 1 MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSFGHP 60
Query: 61 NMQS 64
+QS
Sbjct: 61 TVQS 64
>28830.m000229 mads box protein, putative
Length = 197
Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 18/105 (17%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQE- 59
MGRKK +M++++ ++RQV+F K R G+FKKA+EL +LCAV+ A+V+FS GGK F+
Sbjct: 1 MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAFTFGHP 60
Query: 60 -----MNMQSQLYNPINSHIE------------NQQFTTFLSFLK 87
M + NP N E N+Q++ L LK
Sbjct: 61 CFEAIMKKLADPENPDNGFAEHMAEHEATLRDLNKQYSDLLEQLK 105
>29613.m000367 mads box protein, putative
Length = 183
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEM 60
+GR+KI + + + QVTF K R GLFKKA+EL +LC V+IAI+VFS GK FS
Sbjct: 6 LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSFGHP 65
Query: 61 NMQSQL-----YNPINS 72
+ S L NP+ S
Sbjct: 66 EVGSVLKRFLARNPLGS 82
>29693.m002042 mads box protein, putative
Length = 220
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 2 GRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEMN 61
GR+KI M +++ R +TF K R G++KKA+EL++LC ++ I+VFS GKPFS +
Sbjct: 9 GRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFGHPS 68
Query: 62 MQS 64
++S
Sbjct: 69 LES 71
>29693.m002041 mads box protein, putative
Length = 239
Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 2 GRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEMN 61
GR+KIEM +++ + R +TF K R G++KKA+ELV+L ++A +V+S GKPFS +
Sbjct: 12 GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFAHPS 71
Query: 62 MQS 64
M +
Sbjct: 72 MDA 74
>27866.m000233 mads box protein, putative
Length = 217
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 2 GRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEMN 61
GR+KIE+ ++ ++ QVTF K R GLFKKA+EL LC Q+A++ FS G K F+ N
Sbjct: 13 GRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAFGHPN 72
Query: 62 MQSQLYNPINSHIENQQFTTFLSFLKNLKLITQW 95
+++ L +N + + T + + + QW
Sbjct: 73 VETVLDRYLNEGNPDAKEDTAQTVTSDSPRVQQW 106
>30099.m001672 mads box protein, putative
Length = 217
Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 2 GRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSL 57
GR+KI+M + + ++ QVTF K R GLFKKA+EL +LC +IAI+VFS G K FS
Sbjct: 7 GRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62
>30099.m001671 mads box protein, putative
Length = 226
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEM 60
+GR+KI + + QVTF K R GLFKKA+EL +LC V+IAI+VFS K FS
Sbjct: 26 LGRQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFGHP 85
Query: 61 NMQSQL 66
++S L
Sbjct: 86 EVESVL 91
>29838.m001672 mads box protein, putative
Length = 207
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 2 GRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFS 56
GR++IEM + ++R VTF K R G+FKKA+EL +LC +I+I+VFS G + FS
Sbjct: 8 GRQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFS 62
>29596.m000699 mads box protein, putative
Length = 262
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEM 60
MGR KI + + ++ SRQVTF K R GL KKA EL LC ++ +V+FS+ GK +
Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60
Query: 61 NMQSQLYNPINSHIENQQFTTFLSFLK 87
+M+S + S EN Q +S +K
Sbjct: 61 SMKSIIERYNKSKEENNQTGNPISEVK 87
>28348.m000077 mads box protein, putative
Length = 215
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 2 GRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFS 56
GR+KIE+ +++ N R VTF K + G+FKKA EL +LC +IA+V+FS GK FS
Sbjct: 17 GRQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVFS 71
>29838.m001690 mads box protein, putative
Length = 61
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPF 55
M R+KI++ + + +RQVTF K R GLFKKA EL +LC +IA++VFSA GK F
Sbjct: 1 MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLF 55
>30221.m002218 mads box protein, putative
Length = 233
Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGK 53
MGR KI + +++ +RQVTF K R GL KK +EL LC QI +++FS+ GK
Sbjct: 1 MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGK 53
>29782.m000119 Floral homeotic protein DEFICIENS, putative
Length = 235
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPF 55
MGR KIE+ +++ +RQVT+ K R G+FKKA EL LC ++++++FS G+ F
Sbjct: 1 MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKF 55
>30138.m003939 mads box protein, putative
Length = 244
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPF 55
MGR ++++ +++ +RQVTF K R GL KKA+E+ LC ++A++VFS GK F
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLF 55
>29804.m001536 mads box protein, putative
Length = 266
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSLQEM 60
MGR KI + + ++ SRQVTF K R GL KKA EL LC ++ +++FS+ K +
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAST 87
Query: 61 NMQS--QLYNPINSHIENQQFTTFLSFLK 87
+M S + YN + E QQ S +K
Sbjct: 88 SMNSVIERYNKLKE--EQQQLMNPASEIK 114
>30174.m008934 mads box protein, putative
Length = 244
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPF 55
MGR ++E+ +++ +RQVTF K R GL KKA EL LC ++A+++FS+ GK +
Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLY 55
>29907.m000663 mads box protein, putative
Length = 205
Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKPFSL 57
M R K++M +++ RQVTF K R GL KKA EL LC +I + +FSA GK + L
Sbjct: 1 MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDL 57
>29648.m001978 mads box protein, putative
Length = 234
Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 40/53 (75%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGK 53
MGR +IE+ ++++++RQVT+ K R G+ KKA E+ LC ++++++F++ GK
Sbjct: 1 MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGK 53
>30147.m014133 mads box protein, putative
Length = 213
Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGK--PFSLQ 58
M R KI+M +++ SRQVTF K R GL KKA EL LC ++A+++FS G+ F+
Sbjct: 1 MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFASN 60
Query: 59 EM 60
EM
Sbjct: 61 EM 62
>29908.m005982 mads box protein, putative
Length = 347
Score = 54.7 bits (130), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGK 53
MGR K+E+ +++ +RQVTF K R GL KKA EL LC + IA+++FS G+
Sbjct: 1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGR 53
>30170.m013776 mads box protein, putative
Length = 230
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGK 53
MGR K+++ +++ +RQVTF K R GL KKA EL LC V +A+++FS G+
Sbjct: 1 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGR 53
>30138.m004061 mads box protein, putative
Length = 363
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKP 54
MGR K+++ ++ ++RQVT+ K R G+ KKA EL LC + I +++FS GKP
Sbjct: 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGKP 54
>29739.m003627 mads box protein, putative
Length = 62
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKP 54
MGR+K+++ ++ +RQV + K ++G+ KK EL +LC V + +++FS GKP
Sbjct: 1 MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGKP 54
>29813.m001508 mads box protein, putative
Length = 360
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 1 MGRKKIEMTMVKDNNSRQVTFFK*RIGLFKKANELVSLCAVQIAIVVFSAGGKP 54
MGR K+++ +++ N RQ T+ K + G+ KKA EL LC + I +++FS GKP
Sbjct: 1 MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGKP 54
>29653.m000299 mads box protein, putative
Length = 166
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 5 KIEMTMVKDNNSRQ-VTFFK*RIGLFKKANELVSL--CAVQIAIVVFSAGGKPFSLQEMN 61
KIE+ ++DN + VTF K R GLFKKA E +L ++A++ FS G+PFS + +
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSFGKPS 88
Query: 62 MQS 64
S
Sbjct: 89 PDS 91