Jatropha Genome Database

JcCA0240711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240711.10 - phase: 0 /partial
         (126 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008801 malate dehydrogenase, putative                          241   5e-65
29200.m000165 malate dehydrogenase, putative                          239   3e-64
29200.m000164 malate dehydrogenase, putative                          225   3e-60
28872.m000247 malate dehydrogenase, putative                           51   2e-07

>30174.m008801 malate dehydrogenase, putative
          Length = 332

 Score =  241 bits (616), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 117/126 (92%), Positives = 122/126 (96%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILH+LDIEPA+EAL GVKME+ID
Sbjct: 1   MAKDPVRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHLLDIEPASEALKGVKMELID 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKGVIATTD VEACMGVN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH
Sbjct: 61  AAFPLLKGVIATTDAVEACMGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120

Query: 121 AAADCK 126
           AAADCK
Sbjct: 121 AAADCK 126


>29200.m000165 malate dehydrogenase, putative
          Length = 332

 Score =  239 bits (609), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/126 (91%), Positives = 122/126 (96%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYA+VPMIARGVMLGPDQPVILHMLDI PAAEALNGVKME++D
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKGV+ATTDVVEAC GVNVAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEKH
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query: 121 AAADCK 126
           AAA+CK
Sbjct: 121 AAANCK 126


>29200.m000164 malate dehydrogenase, putative
          Length = 266

 Score =  225 bits (574), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 121/126 (96%)

Query: 1   MANAPLRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHMLDIEPAAEALNGVKMEMID 60
           MA  P+RVLVTGAAGQIGYA+VPMIARG+MLGPDQPVILHMLDI PA EALNGVKME++D
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGMMLGPDQPVILHMLDIPPAVEALNGVKMELVD 60

Query: 61  AAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
           AAFPLLKG++ATTDVV+AC GV++AVMVGGFPRKEGMERKDVM+KN++IYK+QASALEKH
Sbjct: 61  AAFPLLKGIVATTDVVDACTGVSIAVMVGGFPRKEGMERKDVMAKNLAIYKSQASALEKH 120

Query: 121 AAADCK 126
           AAA+CK
Sbjct: 121 AAANCK 126


>28872.m000247 malate dehydrogenase, putative
          Length = 433

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query: 53  GVKMEMIDAAFPLLKGVIATTDVVEACMGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKA 112
           GV ME+ D+ +PLL+ V    D  E       A+++G  PR  GMER D++  N  I+  
Sbjct: 138 GVAMELEDSLYPLLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAE 197

Query: 113 QASALEKHAAADCK 126
           Q  AL   A+ + K
Sbjct: 198 QGKALNAVASRNVK 211