Jatropha Genome Database

JcCA0237741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237741.10 - phase: 0 /pseudo/partial
         (457 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29844.m003173 protein transport protein sec23, putative               547   e-156
30183.m001308 protein transport protein sec23, putative               287   9e-78
29709.m001233 protein transport protein sec23, putative               270   1e-72

>29844.m003173 protein transport protein sec23, putative
          Length = 782

 Score =  547 bits (1409), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/300 (88%), Positives = 286/300 (95%)

Query: 1   GMIVDSSLTNAIRTHRDLINGRAPYHDKSCSFYNRLSQRLSDASIVLDLFACSLDQVGVA 60
           G++VDS L+N+IRTHRDLIN  APY+ KSCSFYNRLSQRLSDASI+LDLFACSLDQ+GVA
Sbjct: 325 GIVVDSDLSNSIRTHRDLINASAPYYWKSCSFYNRLSQRLSDASIILDLFACSLDQIGVA 384

Query: 61  ELKAPVERSGGFMMLGELFESDQFRKCLRHIFSRGEDGSLKMYFDATIEVITTRDVKICG 120
           ELK PVE+SGGFMMLGELFESDQFRKCLRHIFS  E+G+LK+YFDATIEV+TT DVKICG
Sbjct: 385 ELKGPVEKSGGFMMLGELFESDQFRKCLRHIFSCNEEGNLKIYFDATIEVVTTNDVKICG 444

Query: 121 ALGPCVSLHKKNDLVSDRETGQGGTYAWKLGTLTNKTCIAFFFEVGDEQKAHPGSAFFIQ 180
           ALGPCVSL +KN LVSDRETG+GGTY WKLGTLTNKTCIAFFFEVGDEQKAHPGSAFFIQ
Sbjct: 445 ALGPCVSLRQKNGLVSDRETGEGGTYIWKLGTLTNKTCIAFFFEVGDEQKAHPGSAFFIQ 504

Query: 181 FITRYRHGNMGIQKRVTTAARRWVGNKSAEITAGFDQEAAASVMARLAIHRAETCYARDV 240
           FITRYRHGN+GI+KRVTTAARRW GNKSAEITAGFDQEAAA+VMARLAIHRAETCYARDV
Sbjct: 505 FITRYRHGNLGIRKRVTTAARRWAGNKSAEITAGFDQEAAAAVMARLAIHRAETCYARDV 564

Query: 241 IRWLDDNLIRFASKFGDYIQEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSSPDETAF 300
           +RWLDD+LI FASKFGDYIQEDPSTFRLSTN SLYPQFMYYLRRSQFIDVFNS+PDETAF
Sbjct: 565 VRWLDDSLICFASKFGDYIQEDPSTFRLSTNVSLYPQFMYYLRRSQFIDVFNSTPDETAF 624


>30183.m001308 protein transport protein sec23, putative
          Length = 782

 Score =  287 bits (734), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 146/306 (47%), Positives = 198/306 (64%), Gaps = 7/306 (2%)

Query: 1   GMIVDSSLTNAIRTHRDLINGRAPYHDKSCSFYNRLSQRLSDASIVLDLFACSLDQVGVA 60
           G IV   L++ +R+H+DL    APY  K+  FY+ L+++L     VLDLFA +LDQVGVA
Sbjct: 318 GTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYDNLAKQLVSQGHVLDLFASALDQVGVA 377

Query: 61  ELKAPVERSGGFMMLGELFESDQFRKCLRHIFSRGEDGSLKMYFDATIEVITTRDVKICG 120
           E+K  VER+GG ++L E F    F+   + IF  GE  SL + F+  +E+  ++DVKI G
Sbjct: 378 EMKVAVERTGGLVVLAESFGHSVFKDSFKRIFEDGEQ-SLGLCFNGMLEINCSKDVKIQG 436

Query: 121 ALGPCVSLHKKNDLVSDRETGQGGTYAWKLGTLTNKTCIAFFFEVGDEQKAH-PGS---A 176
            LGPC S+ KK   V+D   G+G T AWK+  L   TC+  +F++   +K++ PG+    
Sbjct: 437 ILGPCTSMEKKGPNVADTVVGEGNTTAWKMCGLDKSTCLTVYFDLSSSEKSNAPGAINPQ 496

Query: 177 FFIQFITRYRHGNMGIQKRVTTAARRWVGN--KSAEITAGFDQEAAASVMARLAIHRAET 234
            +IQF+T Y++    I  RVTT  RRW+ +   S E+  GFDQE AA VMARL  H+ E 
Sbjct: 497 LYIQFLTSYQNPEGHILLRVTTITRRWIDSAVSSEELVQGFDQETAAVVMARLTSHKMEI 556

Query: 235 CYARDVIRWLDDNLIRFASKFGDYIQEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSS 294
               D  RWLD NLIR  SKFGDY ++DPS+F L+  FSL+PQFM+ LRRSQF+ VFN+S
Sbjct: 557 EEGFDATRWLDRNLIRLCSKFGDYRKDDPSSFTLNPCFSLFPQFMFNLRRSQFVQVFNNS 616

Query: 295 PDETAF 300
           PDETA+
Sbjct: 617 PDETAY 622


>29709.m001233 protein transport protein sec23, putative
          Length = 761

 Score =  270 bits (689), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/307 (46%), Positives = 189/307 (61%), Gaps = 8/307 (2%)

Query: 1   GMIVDSSLTNAIRTHRDLINGRAPYHDKSCSFYNRLSQRLSDASIVLDLFACSLDQVGVA 60
           G IV  +L+  IR+H+DL    AP+  K+  FY  L+++L     VLDLFAC+LDQVGVA
Sbjct: 298 GAIVSKNLSEPIRSHKDLDKDTAPHFHKAVKFYEGLAKQLVHQGHVLDLFACALDQVGVA 357

Query: 61  ELKAPVERSGGFMMLGELFESDQFRKCLRHIFSRGEDGSLKMYFDATIEVITTRDVKICG 120
           ELK  VER+GG ++L E F    F+  LR +F +  D  L +  +   E+  ++DVK+ G
Sbjct: 358 ELKVAVERTGGLVVLAESFGHSVFKDSLRRVF-QSSDCDLGLSSNGIFEINCSKDVKVQG 416

Query: 121 ALGPCVSLHKKNDLVSDRETGQGGTYAWKLGTLTNKTCIAFFFEVGDEQK----AHPGS- 175
            +GPC SL KK  L SD   GQG T AWK+  L   T +   FE+  +        P S 
Sbjct: 417 IIGPCASLEKKGPLCSDTVVGQGNTSAWKMCGLDKATTLCIIFEIVKKDNLDATVQPTSN 476

Query: 176 AFFIQFITRYRHGNMGIQKRVTTAARRWVGNKSA--EITAGFDQEAAASVMARLAIHRAE 233
            F+ QF+T Y+H N  ++ RVTT +RRWV    +  ++ AGFDQEAAA  MARL   + E
Sbjct: 477 QFYFQFLTYYQHSNGQMRLRVTTLSRRWVAGSGSIQDLIAGFDQEAAAIAMARLVSFKME 536

Query: 234 TCYARDVIRWLDDNLIRFASKFGDYIQEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNS 293
                D IRWLD  LI   S+FGDY ++ PS+F LS   S++PQFM+ LRRSQF+ VFN+
Sbjct: 537 IEADYDPIRWLDKALIHLCSRFGDYQKDSPSSFSLSPRLSIFPQFMFNLRRSQFVQVFNN 596

Query: 294 SPDETAF 300
           SPDETA+
Sbjct: 597 SPDETAY 603