Jatropha Genome Database

JcCA0237241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237241.10 - phase: 1 /partial
         (222 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29905.m000424 conserved hypothetical protein                          246   5e-66

>29905.m000424 conserved hypothetical protein
          Length = 586

 Score =  246 bits (628), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 151/219 (68%), Gaps = 7/219 (3%)

Query: 4   AQQPPHLFLSASNPKSLEDAKRLAENLLDTISLECGASRVSSSKVYNAVPPPQQLLAGVQ 63
           AQQP HLFLSA+N KSLEDAKRLAENLLDT+SLE GASRVSSSK+YNAVPPPQQLLAGVQ
Sbjct: 238 AQQPLHLFLSANNSKSLEDAKRLAENLLDTVSLEFGASRVSSSKIYNAVPPPQQLLAGVQ 297

Query: 64  NSGNENKLNAIPPAGLALSAMSSTPPIPATSVKLHVTN---SQGTVYQPGGLINSXXXXX 120
           +SGNE K+N IP AGLALSAMSSTP IPA+SV ++ T    SQGTVYQPGGL+N      
Sbjct: 298 SSGNEQKVNTIPAAGLALSAMSSTPLIPASSVAIYRTTPVFSQGTVYQPGGLVNCGSTQS 357

Query: 121 XXXXXXXXSVXXXXXXXXXXXXXPQATPLQQVALALRQSTSPITSTVAPXXXXXXXXXXX 180
                    +             PQATPLQQVALALRQST+P+TST+AP           
Sbjct: 358 TLVGHPQPLINGGTSYSGYGGIYPQATPLQQVALALRQSTAPVTSTIAPITSVANTAPTP 417

Query: 181 XXXXXXXXXXXXGKEKRPTQKRKFQELPIGLKDPAKCHQ 219
                        KEKRP Q+RKFQELPIG KDPAK HQ
Sbjct: 418 STSSSSIPE----KEKRPAQRRKFQELPIGSKDPAKSHQ 452