Jatropha Genome Database

JcCA0236591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0236591.10 + phase: 2 /pseudo/partial
         (422 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003301 phytochrome B, putative                                 379   e-105
29693.m002076 phytochrome B, putative                                 308   3e-84
30128.m008997 phytochrome A, putative                                 249   2e-66

>29889.m003301 phytochrome B, putative
          Length = 1141

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 174/183 (95%), Positives = 180/183 (98%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           GD++LLCDTVV+CVRELTGYDRVMVYKFHEDEHGEVVAENK+ DLEPYIGLHYPATDIPQ
Sbjct: 238 GDVRLLCDTVVECVRELTGYDRVMVYKFHEDEHGEVVAENKQPDLEPYIGLHYPATDIPQ 297

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
           ASRFLFKQSRVRMIVDCHATPV IIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS
Sbjct: 298 ASRFLFKQSRVRMIVDCHATPVSIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 357

Query: 360 LAMAVIINGNDEEAIGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMEL 419
           LAMAVIINGND+EAIGGR+ MRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMEL
Sbjct: 358 LAMAVIINGNDDEAIGGRSSMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMEL 417

Query: 420 QLA 422
           QLA
Sbjct: 418 QLA 420


>29693.m002076 phytochrome B, putative
          Length = 1131

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 158/183 (86%), Gaps = 8/183 (4%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           GDI +LCDTVV+ V++LTGYDRVMVYKFH+D+HGEV++E +RSDLEPY+GLHYPATDIPQ
Sbjct: 225 GDIGMLCDTVVEDVQKLTGYDRVMVYKFHDDDHGEVLSEIRRSDLEPYLGLHYPATDIPQ 284

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
           A+RFLFKQ+RVRMI DCHA PVR+IQ E L  PLCLV STLR+PHGCH QYMANMGSIAS
Sbjct: 285 AARFLFKQNRVRMICDCHANPVRVIQSEELKHPLCLVNSTLRSPHGCHTQYMANMGSIAS 344

Query: 360 LAMAVIINGNDEEAIGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMEL 419
           L MAV+INGND          +LWGLVVCHHTS R +PFPLRYACEFLMQAFGLQL MEL
Sbjct: 345 LVMAVVINGNDS--------TKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMEL 396

Query: 420 QLA 422
           QLA
Sbjct: 397 QLA 399


>30128.m008997 phytochrome A, putative
          Length = 1124

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 114/187 (60%), Positives = 143/187 (76%), Gaps = 5/187 (2%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           G ++ LCDT+V  V ELTGYDRVM YKFH+D+HGEV++E  +  LEPY+GLHYPATDIPQ
Sbjct: 217 GSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQ 276

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
           A+RFLF +++VRMIVDC A  V+++QDE L   L L GSTLRAPH CH QYM NM S+AS
Sbjct: 277 AARFLFMKNKVRMIVDCRAKHVKVLQDEKLPLELTLCGSTLRAPHSCHLQYMENMDSVAS 336

Query: 360 LAMAVIINGNDEE-----AIGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQ 414
           L MAV++N  DE+     ++  +   RLWGLVVCH+T+ R +PFPLRYACEFL Q F + 
Sbjct: 337 LVMAVVVNEGDEDDDSPTSVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIH 396

Query: 415 LNMELQL 421
           +N EL+L
Sbjct: 397 VNKELEL 403