Jatropha Genome Database

JcCA0234331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0234331.10 + phase: 1 /pseudo/partial
         (154 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001336 ubiquitin-protein ligase, putative                      142   9e-35
29701.m000599 protein binding protein, putative                       129   7e-31
29851.m002394 protein binding protein, putative                       103   2e-23
29929.m004755 protein binding protein, putative                        80   4e-16
29929.m004757 ubiquitin-protein ligase, putative                       75   1e-14
30147.m013808 ubiquitin-protein ligase, putative                       65   1e-11

>29681.m001336 ubiquitin-protein ligase, putative
          Length = 243

 Score =  142 bits (357), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 74/78 (94%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VIFPS++QLQ+GITDLEDKKQ E+CNIRY+R+DELE+ +LSEIDIEREEECGIC+E+ SK
Sbjct: 97  VIFPSLLQLQRGITDLEDKKQKEVCNIRYRRRDELEKERLSEIDIEREEECGICLEMHSK 156

Query: 61  AVLPNCNHSLCLKCFRDW 78
            +LPNCNHSLCLKC++DW
Sbjct: 157 VILPNCNHSLCLKCYQDW 174


>29701.m000599 protein binding protein, putative
          Length = 278

 Score =  129 bits (323), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 72/78 (92%), Gaps = 1/78 (1%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VIFPS++QLQ+GI DL+++KQ EIC+ RYK+KDE++RGKLSEID+EREEECGIC+EI +K
Sbjct: 96  VIFPSLLQLQRGINDLDERKQKEICS-RYKKKDEMDRGKLSEIDLEREEECGICLEINTK 154

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLP CNHSLC++C+R+W
Sbjct: 155 VVLPKCNHSLCMRCYRNW 172


>29851.m002394 protein binding protein, putative
          Length = 247

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 65/78 (83%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI+PS++QLQ+G+TD EDKKQ  +C  RY+R+DE E    +++DIEREEECGICME+ SK
Sbjct: 101 VIYPSLLQLQRGVTDTEDKKQKAVCLERYRRRDEEEHRLRTDVDIEREEECGICMEMNSK 160

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNCNH+LCLKC+ +W
Sbjct: 161 IVLPNCNHALCLKCYHEW 178


>29929.m004755 protein binding protein, putative
          Length = 253

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
            I+PS+  L+    +LED  +       + RK   ++ K S+ DIER++ECGICME  +K
Sbjct: 108 TIYPSLRLLEGEFIELEDNPRRSQWTEAFSRKRVEDKRKRSDYDIERDDECGICMEDSAK 167

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC HSLC+ CF DW
Sbjct: 168 MVLPNCGHSLCISCFHDW 185


>29929.m004757 ubiquitin-protein ligase, putative
          Length = 254

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 12/84 (14%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGK------LSEIDIEREEECGIC 54
           VI PS+ +L   + +LED K   +      R D L + K      L+ ID+ERE+ECGIC
Sbjct: 108 VILPSLQRLHSNLEELEDIKDGHL------RMDSLAKKKVEGDFRLANIDLEREDECGIC 161

Query: 55  MEIGSKAVLPNCNHSLCLKCFRDW 78
           +E   K VLPNC H++C+KC+R+W
Sbjct: 162 LEPCQKMVLPNCCHAMCIKCYRNW 185


>30147.m013808 ubiquitin-protein ligase, putative
          Length = 253

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 54/79 (68%), Gaps = 2/79 (2%)

Query: 1   VIFPSIMQLQKGITDLEDKKQN-EICNIRYKRKDELERGKLSEIDIEREEECGICMEIGS 59
           VI PS+ +L     +L+  ++N +   +  K   E +R K+S++D++RE+ECGIC+E  +
Sbjct: 107 VILPSLQRLHGDSLELDITQENGQYVEMVVKMGLE-DRRKVSDMDLDREDECGICLEPCT 165

Query: 60  KAVLPNCNHSLCLKCFRDW 78
           K V+P+C H++C+ C+RDW
Sbjct: 166 KMVVPSCCHAMCINCYRDW 184