Jatropha Genome Database

JcCA0233921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0233921.10 - phase: 0 /pseudo/partial
         (412 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014167 5'->3' exoribonuclease, putative                        384   e-107
30128.m008637 5'->3' exoribonuclease, putative                         85   6e-17
30073.m002213 5'->3' exoribonuclease, putative                         66   3e-11

>30170.m014167 5'->3' exoribonuclease, putative
          Length = 1113

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/338 (62%), Positives = 230/338 (68%), Gaps = 11/338 (3%)

Query: 45   MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
            MNGYISPCSGDT PPIFRSPV GMEDILDN VICA+YRLPDPHKH+TRPPAGVIFPKK+V
Sbjct: 768  MNGYISPCSGDTHPPIFRSPVAGMEDILDNGVICAIYRLPDPHKHVTRPPAGVIFPKKIV 827

Query: 105  NSGDLKPDPVLWHEDSGRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLKVDHNGYAN 164
            N  DLKPDPVLWHEDSGR+PWES R NPPGTISGRQLGE SHRLV+NSLQ+KVDHNGYAN
Sbjct: 828  NVVDLKPDPVLWHEDSGRKPWESDRRNPPGTISGRQLGEASHRLVVNSLQMKVDHNGYAN 887

Query: 165  HLHIQTSPYAAAPHVPPHSSYLNGLHDPGRQRIAQPRTDYSNSGHHRSSNPSHYNQ--GY 222
            HLH    PYAA  HVP HSSY NG HDP R R  QPR DYS++G +R  NP+ YN   GY
Sbjct: 888  HLHAPIPPYAATAHVPVHSSYANGSHDPRRDRTGQPRMDYSHAGQNRFFNPTQYNNNHGY 947

Query: 223  DRPYASSTAIPHHXXXXXXXXXXXXXXXQHSRHQAYHTPEFDQNGGPQYLPGSIPQASSG 282
             + YAS     H                QHSR Q Y  PEF QN GP+YL GS+   S  
Sbjct: 948  GQSYASPGN-AHFSGSRPQYERENRSNGQHSR-QVYLQPEFHQN-GPRYLHGSMAGTSE- 1003

Query: 283  PPTXXXXXXXXXXXKHQSPGAGTHQHWSGGFPPLSNQNVPVGYDHHQQRGNRYSALDSRG 342
              +            HQ P   +HQ W  G PP  N N P GYD  QQRGNRYS L++RG
Sbjct: 1004 --SYAYQDDYDGYQSHQPPRDASHQQWGNGLPPPVNLNFPRGYDQSQQRGNRYSVLETRG 1061

Query: 343  KTAPPH-GAGGLNRG--PRPSHDGANRRPMYPPPGGAS 377
               P   GA GL+R   P+P H GANRRP YPP GGA+
Sbjct: 1062 SRNPQLPGASGLDRRPPPQPPHGGANRRPQYPPHGGAN 1099


>30128.m008637 5'->3' exoribonuclease, putative
          Length = 964

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY+     +       SPV G  DI  N+V+   Y  P  H+HI  PP GV+ P+K++
Sbjct: 657 MNGYLWLSERNMWRSTIASPVNGFPDIEHNQVLNITYLNPINHRHIPEPPNGVVMPEKIL 716

Query: 105 NSGDLKPDPVLWHED-SGRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLK 156
              D+KP P+LWHED  GRR    +R      I+G  LGE +HRLV N+L ++
Sbjct: 717 KPLDIKPFPMLWHEDHGGRRQQGRERPQVARAIAGPLLGEAAHRLVKNTLNIR 769


>30073.m002213 5'->3' exoribonuclease, putative
          Length = 1545

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 59/125 (47%), Gaps = 21/125 (16%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNG++        P    SPV GM  I  N VI   YR P  H HI+R P GVI P K +
Sbjct: 677 MNGFVYISDNAVCPEEVSSPVDGMRMIAHNRVISVSYRYPLFHYHISRLPQGVILPGKDI 736

Query: 105 NSGDLKPDPVLWHED------SGRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLKVD 158
           +       P+L HE       S RRP        P ++SG  L  ++HRLV +   +K D
Sbjct: 737 S-------PLLQHEKVVPAGVSSRRPI-------PRSVSGTHLANLAHRLVSSCTPIKQD 782

Query: 159 HN-GY 162
            N GY
Sbjct: 783 DNLGY 787