Jatropha Genome Database

JcCA0230831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0230831.10 - phase: 0 
         (101 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29838.m001690 mads box protein, putative                              108   4e-25
30147.m014133 mads box protein, putative                               89   3e-19
29908.m005982 mads box protein, putative                               84   2e-17
29804.m001536 mads box protein, putative                               82   4e-17
30221.m002218 mads box protein, putative                               82   5e-17
30138.m003939 mads box protein, putative                               82   5e-17
30170.m013776 mads box protein, putative                               82   5e-17
30174.m008934 mads box protein, putative                               81   9e-17
29596.m000699 mads box protein, putative                               80   3e-16
29648.m001978 mads box protein, putative                               77   1e-15
29782.m000119 Floral homeotic protein DEFICIENS, putative              75   4e-15
29907.m000663 mads box protein, putative                               75   6e-15
28348.m000077 mads box protein, putative                               75   8e-15
29693.m002039 mads box protein, putative                               70   1e-13
30099.m001672 mads box protein, putative                               69   5e-13
29613.m000367 mads box protein, putative                               68   7e-13
30138.m004061 mads box protein, putative                               67   2e-12
30099.m001671 mads box protein, putative                               67   2e-12
29813.m001508 mads box protein, putative                               66   3e-12
29693.m002042 mads box protein, putative                               65   5e-12
29693.m002041 mads box protein, putative                               64   1e-11
29838.m001672 mads box protein, putative                               64   2e-11
28830.m000229 mads box protein, putative                               63   3e-11
27866.m000233 mads box protein, putative                               63   4e-11
29739.m003627 mads box protein, putative                               62   8e-11
29653.m000299 mads box protein, putative                               52   5e-08
27893.m000228 mads box protein, putative                               51   9e-08
28180.m000391 mads box protein, putative                               51   1e-07
29912.m005524 mads box protein, putative                               49   5e-07
29333.m001063 mads box protein, putative                               46   3e-06

>29838.m001690 mads box protein, putative
          Length = 61

 Score =  108 bits (271), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/58 (93%), Positives = 55/58 (94%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          MTRQKIQIKKIDN TARQVTFSKRRRGLFKKAYELSTLCDAEIAL+VFS TGKL EYA
Sbjct: 1  MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYA 58


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 50/58 (86%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R KIQ+++I+N T+RQVTFSKRR GL KKAYELS LCDAE+A+I+FS  G+LSE+A
Sbjct: 1  MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFA 58


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 48/58 (82%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R K++IK+I+N T RQVTFSKRR GL KKAYELS LCD +IALI+FS +G+LS ++
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R KI I++IDN+T+RQVTFSKRR GL KKA ELS LCDAE+ +I+FS T KL +YA
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYA 85


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEY 57
          M R KI IK+I+N T RQVTFSKRR GL KK +ELS LCDA+I LI+FS TGK+ +Y
Sbjct: 1  MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQY 57


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 47/58 (81%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R ++Q+K+I+N   RQVTFSKRR GL KKA+E+S LCDAE+ALIVFS  GKL EY+
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYS 58


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 46/55 (83%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLS 55
          M R K+QIK+I+N T RQVTFSKRR GL KKAYELS LCD ++ALI+FS +G+LS
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLS 55


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 81.3 bits (199), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 46/58 (79%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R ++++K+I+N   RQVTFSKRR GL KKAYELS LCDAE+ALI+FS  GKL E+ 
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 48/58 (82%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R KI I++IDN+T+RQVTFSKRR GL KKA EL+ LCDAE+ +++FS TGKL +++
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFS 58


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 48/57 (84%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEY 57
          M R +I+IK+I+N++ RQVT+SKRR G+ KKA E++ LCDAE++LI+F+ +GK+ EY
Sbjct: 1  MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEY 57


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 75.5 bits (184), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 45/53 (84%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          M R KI+IKKI+N T RQVT+SKRR G+FKKA EL+ LCDA+++LI+FS +G+
Sbjct: 1  MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGR 53


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R K+Q+K+I+N   RQVTF KRR GL KKA ELS LCDAEI L +FS  GKL + A
Sbjct: 1  MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLA 58


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 74.7 bits (182), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 3  RQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKL 54
          RQKI+IKK++N   R VTFSKR+ G+FKKA ELSTLC AEIA+++FSG GK+
Sbjct: 18 RQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKV 69


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 44/53 (83%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          M R+KI++K + + ++RQVTFSKRR GLFKKA EL+TLC A+IA++VFS  GK
Sbjct: 1  MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGK 53


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 40/52 (76%)

Query: 3  RQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKL 54
          RQKI + K+ N +  QVTFSKRR GLFKKA ELSTLC AEIA+IVFS   K+
Sbjct: 8  RQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKV 59


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 39/53 (73%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          + RQKI I+KI   +  QVTFSKRR GLFKKA EL TLC  EIA+IVFS  GK
Sbjct: 6  LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGK 58


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          M R K++IK++++ + RQVT+SKRR G+ KKA ELS LCD  I L++FS TGK
Sbjct: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 37/51 (72%)

Query: 3  RQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          RQKI I+KI   T  QVTFSKRR GLFKKA EL TLC  EIA++VFS   K
Sbjct: 28 RQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANK 78


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLS 55
          M R K++IKK++N   RQ T+ KR+ G+ KKA ELS LCD +I L++FS TGK S
Sbjct: 1  MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGKPS 55


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 3  RQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          RQKI +K+I+N   R +TFSKRR G++KKA EL TLC AE+ ++VFS  GK
Sbjct: 10 RQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGK 60


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 3  RQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          RQKI++KKI+N   R +TFSKRR G++KKA EL TL  AE+A +V+S  GK   +A
Sbjct: 13 RQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFA 68


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 3  RQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFS 49
          RQ+I++ KI   + R VTFSKRR G+FKKA ELSTLC AEI++IVFS
Sbjct: 9  RQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFS 55


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 38/53 (71%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          M R+K Q+  I   +ARQV+FSKRR G+FKKA EL TLC  E A+++FS  GK
Sbjct: 1  MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGK 53


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 39/52 (75%)

Query: 3  RQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKL 54
          RQKI+IK I+  +  QVTFSKRR GLFKKA ELS LC A++A++ FS   K+
Sbjct: 14 RQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKV 65


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLSEYA 58
          M R+K++I ++++  ARQV +SKR+ G+ KK  EL+TLCD ++ LI+FS +GK S Y 
Sbjct: 1  MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGKPSLYV 58


>29653.m000299 mads box protein, putative
          Length = 166

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 5  KIQIKKI-DNNTARQVTFSKRRRGLFKKAYELSTL--CDAEIALIVFSGTGK 53
          KI+IKKI DN T   VTFSKRR GLFKKA E   L    AE+ALI FS +G+
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGR 80


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 51.2 bits (121), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 4  QKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGK 53
          +K  +KK+++   R V+F+KRR GLF KA EL  LCDA++A++V S   K
Sbjct: 5  RKRPMKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSK 54


>28180.m000391 mads box protein, putative
          Length = 328

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 4  QKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFS 49
          +K+ +KK +    R V+F+KRR GLF KA EL  LCDA++AL+V S
Sbjct: 5  RKLPMKKRETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSS 50


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFS 49
          M R K+ ++ I N  +R +T+ KR++GL KK  E   LCD +  +I+FS
Sbjct: 1  MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFS 49


>29333.m001063 mads box protein, putative
          Length = 291

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 1  MTRQKIQIKKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFS 49
          MTR+K+++  I N+ AR+ +  KRR GL KK  EL+TLC     ++++S
Sbjct: 1  MTRKKVKLVWIVNDAARKASLKKRRIGLLKKVSELTTLCGVSAFVVIYS 49