Jatropha Genome Database

JcCA0230221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0230221.10 - phase: 0 /partial
         (129 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29601.m000451 Exosome complex exonuclease RRP41, putative             254   6e-69
27538.m000317 Exosome complex exonuclease RRP41, putative              72   6e-14
29794.m003377 Exosome complex exonuclease RRP46, putative              54   1e-08

>29601.m000451 Exosome complex exonuclease RRP41, putative
          Length = 241

 Score =  254 bits (650), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 122/129 (94%), Positives = 126/129 (97%)

Query: 1   MDFVSPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
           M++VSPEGLRLDGRRPMEMRQLRAQIGAV+KADGSAVFEMGNTKVIAAVYGPREVQNRSQ
Sbjct: 1   MEYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIY 120
           QI DQALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTME CILTHLMPRSQIDIY
Sbjct: 61  QIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 121 VQVLSADGG 129
           VQVL ADGG
Sbjct: 121 VQVLQADGG 129


>27538.m000317 Exosome complex exonuclease RRP41, putative
          Length = 180

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 5/122 (4%)

Query: 7   EGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQA 66
           + +R DGR   E R    + GAV  A GSA  E GNTKVI +V+GPRE   ++   +D  
Sbjct: 31  DWVRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDVG 89

Query: 67  LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQVLSA 126
            + C  S   FST   +R    D +  E S ++ +++E  I+    P++ +D++  VL +
Sbjct: 90  RLNCNVSYTTFST--PVRGQGSDCK--EFSSMLHKSLEGAIMLETFPKTTVDVFALVLES 145

Query: 127 DG 128
            G
Sbjct: 146 GG 147


>29794.m003377 Exosome complex exonuclease RRP46, putative
          Length = 211

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 18/124 (14%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR P ++R L      + +A GSA +  G+TKV+AAVYGP+    +++      +  
Sbjct: 5   RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKACI-- 62

Query: 70  CEYSMANFSTGDRMRKPKG---DRRSTEISLVIRQTMEA-CILTHLMPRSQIDIYVQVLS 125
                      + + KPK     +   E  +++++T++  C+LT + P +   + VQV+ 
Sbjct: 63  -----------EVIWKPKTGQIGKVEKEYEMILKRTLQTICVLT-INPNTTTSVIVQVVH 110

Query: 126 ADGG 129
            DG 
Sbjct: 111 DDGA 114