Jatropha Genome Database

JcCA0229911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0229911.10 + phase: 0 /partial
         (185 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29613.m000361 DNA polymerase delta small subunit, putative            353   2e-98

>29613.m000361 DNA polymerase delta small subunit, putative
          Length = 425

 Score =  353 bits (907), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 166/181 (91%), Positives = 171/181 (94%)

Query: 5   QNLAPKDQSRLSEPVKELDIFLSQIAAGVPLDIMPGPNDPANFSLPQQSLHRCLFPGSAT 64
           QNLA KDQSRLSEPVKELDIFLSQIAA +P+DIMPG NDPANFSLPQQ LHRCLFPGSA 
Sbjct: 243 QNLASKDQSRLSEPVKELDIFLSQIAASMPMDIMPGSNDPANFSLPQQPLHRCLFPGSAA 302

Query: 65  YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNT 124
           YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEF+ERTLKWRHLAPTAPNT
Sbjct: 303 YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFMERTLKWRHLAPTAPNT 362

Query: 125 LGCYPFTDRDPFLIESCPHVYFVANQDKYGTRMLKGPEGQLIRLISIPKFSETGVAVMVS 184
           LGCYPFTDRDPFLIESCPHVYFV NQDKYGTR+LKG EGQL RLISIPKF ETGVAV+ S
Sbjct: 363 LGCYPFTDRDPFLIESCPHVYFVGNQDKYGTRLLKGSEGQLSRLISIPKFCETGVAVVGS 422

Query: 185 I 185
           I
Sbjct: 423 I 423