Jatropha Genome Database

JcCA0224551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224551.10 + phase: 0 
         (106 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004555 NEFA-interacting nuclear protein NIP30, putative        180   1e-46

>30076.m004555 NEFA-interacting nuclear protein NIP30, putative
          Length = 208

 Score =  180 bits (457), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 98/104 (94%)

Query: 1   MAEESPRAMRLMNFISEEQLDEAKKTRGERVDDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M E S R ++LMNF+SEEQLDEAKK+RGERV+DGTAQRDRPLYEILKENKDK+DAEFNER
Sbjct: 1   MEEGSSRPIKLMNFVSEEQLDEAKKSRGERVEDGTAQRDRPLYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLEKLEMSRREYEQQMAVDEAEQLRSFQV 104
           FKHRPPKALDEDETEFL+KLEMSRREYEQQ+A +EA+QLRSFQ 
Sbjct: 61  FKHRPPKALDEDETEFLDKLEMSRREYEQQVADEEAQQLRSFQA 104