Jatropha Genome Database

JcCA0224481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224481.10 - phase: 1 /pseudo/partial
         (333 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002049 conserved hypothetical protein                          520   e-148

>29647.m002049 conserved hypothetical protein
          Length = 957

 Score =  520 bits (1340), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/297 (85%), Positives = 262/297 (88%)

Query: 20  CQQCEASLQFLQSLCQQKLFRERLLRNKELCGKGGVLFLAHGILKLKITAPFVESSTVVA 79
           CQQCEASLQFLQSLCQQKLFRERLLRNKELCGKGGVLFLA  ILKL I  PF+ESSTVVA
Sbjct: 226 CQQCEASLQFLQSLCQQKLFRERLLRNKELCGKGGVLFLAQAILKLNIIPPFIESSTVVA 285

Query: 80  AVSRLKAKVLSILLHLCEAESISYLDEVASSPGSLDXXXXXXXXXXXXXXXXXXKDPKHL 139
           AVSRLKAKVLSILLHLCEAESISYLDEVASSPGS D                  KDPKHL
Sbjct: 286 AVSRLKAKVLSILLHLCEAESISYLDEVASSPGSFDLAKSVALEVLELLKAALSKDPKHL 345

Query: 140 SACSERTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGEFLSIWCSS 199
           +A SERTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGEFLSIWCSS
Sbjct: 346 TASSERTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGEFLSIWCSS 405

Query: 200 ELPPREEDATLEYDVFTAAGWFLDTFSSLDQSSAINLEITLIPSNMPQATYAHQRTSLFV 259
           ELP REEDATLE+D+F AAGW LDT SSL+ S+A+N EITLIPSNMPQATYAHQRTSLFV
Sbjct: 406 ELPLREEDATLEFDIFIAAGWVLDTISSLNLSNALNSEITLIPSNMPQATYAHQRTSLFV 465

Query: 260 KVIANLHCFVPNICEEQERNLFLHKFCECMRMNPSESLPGFSFTSGANKAITVCRNL 316
           KVIANLHCFVPNICEEQERNLFLHKF ECMRM+PSE+LP FSFTS ANKA TVCRNL
Sbjct: 466 KVIANLHCFVPNICEEQERNLFLHKFLECMRMDPSETLPEFSFTSDANKANTVCRNL 522