Jatropha Genome Database

JcCA0224291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224291.10 + phase: 0 /partial
         (71 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30072.m000942 replication factor C / DNA polymerase III gamma-ta...   144   1e-35
29648.m002014 replication factor C / DNA polymerase III gamma-ta...    72   7e-14
29648.m002000 replication factor C / DNA polymerase III gamma-ta...    69   5e-13
29634.m002116 replication factor C / DNA polymerase III gamma-ta...    68   7e-13
28098.m000127 Replication factor C subunit, putative                   61   1e-10
30190.m011152 replication factor C / DNA polymerase III gamma-ta...    55   7e-09

>30072.m000942 replication factor C / DNA polymerase III gamma-tau
          subunit, putative
          Length = 342

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 69/71 (97%)

Query: 1  MLWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
          MLWVDKYRPKTLDQ++ HEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
Sbjct: 1  MLWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 61 ASAEKVKVENR 71
           SAEKVKVEN+
Sbjct: 61 PSAEKVKVENK 71


>29648.m002014 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 360

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 43/67 (64%)

Query: 3   WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
           WV+KYRP++L  V AH DI   + +L  E   PHLL YGP G+GK + I+A+ R+++G  
Sbjct: 39  WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQ 98

Query: 63  AEKVKVE 69
              + +E
Sbjct: 99  YHNMILE 105


>29648.m002000 replication factor C / DNA polymerase III gamma-tau
          subunit, putative
          Length = 342

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
          WV+KYRPK +  V   E++ + L   +   +CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63 AEKVKV 68
            K +V
Sbjct: 71 LYKSRV 76


>29634.m002116 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 779

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query: 2   LWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGA 61
            W DK++P +L   I H+  AQ LK+LV   + PH+L  GPSGSGK++L MALL +IFG 
Sbjct: 432 FWADKHQPSSLSGFICHKQEAQLLKQLVFHNNIPHILLKGPSGSGKRSLAMALLCEIFGG 491

Query: 62  S 62
           +
Sbjct: 492 A 492


>28098.m000127 Replication factor C subunit, putative
          Length = 661

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 43/69 (62%)

Query: 3   WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
           W DKYRPKTL+  I ++  A  ++ L+   +C H +F G  G GK+T+I A++++ +G  
Sbjct: 298 WADKYRPKTLEAFICNQSTAAKVQGLIKGIECNHFIFEGSPGVGKRTMIRAMIQEAYGPE 357

Query: 63  AEKVKVENR 71
             + + E++
Sbjct: 358 TVQTREESK 366


>30190.m011152 replication factor C / DNA polymerase III gamma-tau
          subunit, putative
          Length = 333

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
          WV+KYRP  +  ++ +ED    L+ +  + + P+L+  GP G+GK T I+AL  ++ G +
Sbjct: 17 WVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 76

Query: 63 AEKVKVE 69
           ++  +E
Sbjct: 77 YKEAVLE 83