Jatropha Genome Database

JcCA0221281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0221281.10 + phase: 0 
         (100 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001663 conserved hypothetical protein                           83   3e-17

>29680.m001663 conserved hypothetical protein
          Length = 104

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 58/101 (57%), Gaps = 15/101 (14%)

Query: 4   SKILVVFLILAFCFEPMLAVRSLDGDEW----LQIQSLARGKVPSSSHSGCTYGLNGKGG 59
           S ILVV ++   C E  LA+R L+GD+W    L+IQSLARGKVPSS  S CTY   G G 
Sbjct: 10  SVILVVSVLFVSCVEQTLAIRPLEGDKWVETNLKIQSLARGKVPSSGSSSCTYVPGGSGR 69

Query: 60  CPNLKLKNFAGQLAHHLPHPTILINAAANFGVASVNKEIQK 100
           CP L   N AG +A           A  NFG+AS  +E QK
Sbjct: 70  CP-LNEMNVAGHVAR----------ATVNFGIASTTEETQK 99