Jatropha Genome Database

JcCA0214811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0214811.10 - phase: 0 /pseudo
         (162 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29762.m000496 ubiquitin-activating enzyme E1, putative                260   2e-70
30131.m007087 ubiquitin-activating enzyme E1b, putative                55   1e-08

>29762.m000496 ubiquitin-activating enzyme E1, putative
          Length = 467

 Score =  260 bits (665), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/126 (96%), Positives = 124/126 (98%)

Query: 1   MHRQVIHTEPFIGQPKVKSAAAACRSINSTIQIVEHQEALRTHNALEIFSQYDVIVDATD 60
           MHRQVIHTE FIGQPKVKSAAAACRSINSTIQIVEHQEALRT NALEIFSQYD+IVDATD
Sbjct: 133 MHRQVIHTEAFIGQPKVKSAAAACRSINSTIQIVEHQEALRTSNALEIFSQYDIIVDATD 192

Query: 61  NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTTACQRCAD 120
           NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPP+TACQRCAD
Sbjct: 193 NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPSTACQRCAD 252

Query: 121 SGVLGV 126
           SGVLGV
Sbjct: 253 SGVLGV 258


>30131.m007087 ubiquitin-activating enzyme E1b, putative
          Length = 644

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 1   MHRQVIHTEPFIGQPKVKSAAAACRSINSTIQIVEHQEALRTHN-ALEIFSQYDVIVDAT 59
           ++RQ +  +  +GQ K K A  A       I+I  +   ++  +  ++ F Q+  +++  
Sbjct: 52  LNRQFLFRKSHVGQSKAKVARDAVLRFKPHIRITSYHANVKDSDFNVDFFKQFSAVLNGL 111

Query: 60  DNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTT 113
           DN  +R  ++  C+    PLV     G  GQ+TV+      CY C  P P P +
Sbjct: 112 DNLDARRHVNRLCLAAEVPLVESGTTGFLGQVTVHVKGKTECYECQ-PKPAPKS 164