Jatropha Genome Database

JcCA0207121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0207121.10 + phase: 0 /pseudo
         (238 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27798.m000581 conserved hypothetical protein                          349   8e-97

>27798.m000581 conserved hypothetical protein
          Length = 868

 Score =  349 bits (895), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 164/178 (92%), Positives = 171/178 (96%)

Query: 26  GEETKKNKFREREASDDALGYPDIDEDALLNTQCPKNLELRWQTEVSSSIYASPLIADIN 85
           GEE+ KNKFREREA+DDALGYP+IDE ALLNTQCP+NLELRWQTEVSSSIYASPLIADIN
Sbjct: 24  GEESSKNKFREREATDDALGYPEIDETALLNTQCPRNLELRWQTEVSSSIYASPLIADIN 83

Query: 86  SDGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATY 145
           SDGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATY
Sbjct: 84  SDGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATY 143

Query: 146 NGEVLFFRVSGYMMTEKLVVPRRSVKKDWHVGLNPDPVDRSHPDVHDEQLISEAAGKK 203
           NGEVLFFRVSGYMMTEKLVVPRR V+KDWHVGLNPDPVDRS PDVHD+QL+ EA  KK
Sbjct: 144 NGEVLFFRVSGYMMTEKLVVPRRRVRKDWHVGLNPDPVDRSQPDVHDDQLVFEAMEKK 201