Jatropha Genome Database

JcCA0205491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0205491.10 + phase: 2 /pseudo/partial
         (93 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          121   5e-29

>27810.m000636 conserved hypothetical protein
          Length = 1054

 Score =  121 bits (304), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 71/82 (86%), Gaps = 1/82 (1%)

Query: 13  HDCRQDIANNLIERLSDEEIAIRHQASKLISMIDPSLVMPALVHLLYSSDEGL-SYASTA 71
           H   QD+ANNL+ERLSDE+IAI  QAS L+S+IDPSLVMPAL+ L+YSSD+GL SY STA
Sbjct: 474 HVSWQDLANNLLERLSDEDIAICQQASSLLSVIDPSLVMPALISLIYSSDKGLQSYGSTA 533

Query: 72  FTAMLQYHNQKPEVICMLLDCL 93
           F  ML++HNQ+PEVIC+LLDCL
Sbjct: 534 FIGMLKHHNQQPEVICLLLDCL 555