Jatropha Genome Database

JcCA0194091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0194091.10 - phase: 2 /partial
         (473 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30217.m000265 conserved hypothetical protein                          858   0.0  

>30217.m000265 conserved hypothetical protein
          Length = 595

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/475 (87%), Positives = 433/475 (91%), Gaps = 2/475 (0%)

Query: 1   RRLLNLGPRARVFVIDSHRPIHLHNLSEHNDSVIVLYTHDDEHQADLAYDFDVSALANAS 60
           RRLLNLG +ARVFVID HRPIHLHNLS+ N+SVIVLY++DDEHQADLAYDFDVSALANAS
Sbjct: 97  RRLLNLGTKARVFVIDCHRPIHLHNLSDQNESVIVLYSNDDEHQADLAYDFDVSALANAS 156

Query: 61  ELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRVSKDN--DPVQLFRKLKREYYHMG 118
           EL                              KRRRVSK+N  DPV+LFRKLKREYYHMG
Sbjct: 157 ELNSDDEGGDESDDSEEDSESEVEEDGSGGSRKRRRVSKENEDDPVRLFRKLKREYYHMG 216

Query: 119 TFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINS 178
           TFHGKPSGCLMYDLSHSLRKNT ELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINS
Sbjct: 217 TFHGKPSGCLMYDLSHSLRKNTTELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINS 276

Query: 179 SGNLEAVSVVTLKDGTKIRAPETSRIQYEDEPRLMLLREWNLFDSMLCSSYIAPKLKTWS 238
           SGNLEAVS+VTLKDGTKIRAPE+SRI YEDEPRLMLLREWNLFDSMLCSSYIA KLKTWS
Sbjct: 277 SGNLEAVSMVTLKDGTKIRAPESSRIAYEDEPRLMLLREWNLFDSMLCSSYIATKLKTWS 336

Query: 239 DNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRL 298
           DNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRL
Sbjct: 337 DNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERFLPEYGLTDFYYRSFLRL 396

Query: 299 HGYSSRVSAADVVYGVTALLESFVNSDGSCASKQFGVAYDALSLNNLDKLKIGMQQAIKV 358
           HGYSS+VSAADVVYGVTALLESFV+SDGSCASKQFGVAYDALSL+NLDKLK GMQQAIKV
Sbjct: 397 HGYSSKVSAADVVYGVTALLESFVSSDGSCASKQFGVAYDALSLSNLDKLKAGMQQAIKV 456

Query: 359 QRAILRQGSTAITKSGSVRSGRKFRWVKLEDSVDTKLLGYPQALTKFCYFIMDALREKGA 418
           QR+ILRQGS AITK GS+RSGRKFRWVKLEDSVDTKLLGYPQALTKFCYF+MDALREKGA
Sbjct: 457 QRSILRQGSAAITKPGSIRSGRKFRWVKLEDSVDTKLLGYPQALTKFCYFVMDALREKGA 516

Query: 419 RAKPLVCACLSQEPNKMLIVGVCGKPRLGAVQGNAFGVAFRNAAEEIGAEVFHEL 473
           RAKPL+CACLSQEPNKMLIVGVCGKPRLGAVQGNAFG+AFRNAAEEIGAE FHEL
Sbjct: 517 RAKPLLCACLSQEPNKMLIVGVCGKPRLGAVQGNAFGIAFRNAAEEIGAEFFHEL 571