Jatropha Genome Database

JcCA0192231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192231.10 + phase: 0 /partial/short
         (45 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30189.m001658 protein phosphatase 2c, putative                         65   9e-12
29983.m003152 protein phosphatase 2c, putative                         47   2e-06
29908.m006036 protein phosphatase 2c, putative                         45   8e-06

>30189.m001658 protein phosphatase 2c, putative
          Length = 295

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 32/45 (71%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRFG 45
           VMQNQEAVDLVKPIKDPQ             KSKDDISCIVIRFG
Sbjct: 251 VMQNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 295


>29983.m003152 protein phosphatase 2c, putative
          Length = 283

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQ+A+D +K IKD Q             KSKDDISCIV+RF
Sbjct: 239 VMSNQDAMDSIKDIKDAQLAAKRVIEEAVSRKSKDDISCIVVRF 282


>29908.m006036 protein phosphatase 2c, putative
          Length = 280

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           V+ NQEAVD+ + IKDP               SKDDISC+V+RF
Sbjct: 235 VVSNQEAVDIARRIKDPMKAAKQLTAEALNRDSKDDISCVVVRF 278