Jatropha Genome Database

JcCA0155261.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155261.30 + phase: 0 /pseudo/partial
         (254 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29877.m000465 exonuclease, putative                                   130   4e-31
30138.m004046 exonuclease, putative                                    99   2e-21
30138.m004045 exonuclease, putative                                    74   7e-14

>29877.m000465 exonuclease, putative
          Length = 194

 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 9  ATEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSR 68
          ++EIVFFDLETTVPNR G +FWVLEFGAIIVCPRKLVE+ES++TLIRPKDLSVVAL+S R
Sbjct: 12 SSEIVFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKDLSVVALRSGR 71

Query: 69 SDGITREAVANAPILKKLQIR-YSVF 93
          S GITR AVA+AP  +++  + YS+ 
Sbjct: 72 SGGITRNAVADAPAFEEVSDKIYSIL 97


>30138.m004046 exonuclease, putative
          Length = 501

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 59/77 (76%)

Query: 10 TEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSRS 69
          +EI FFDLETTVPNR GQ F +LEFGAI+VC RKL EL S+STL+RP +LS+++  S R 
Sbjct: 10 SEIAFFDLETTVPNRPGQGFAILEFGAILVCSRKLEELHSYSTLVRPANLSLISPTSVRC 69

Query: 70 DGITREAVANAPILKKL 86
          +GIT +AV  AP   ++
Sbjct: 70 NGITHDAVVLAPTFAEI 86


>30138.m004045 exonuclease, putative
          Length = 448

 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 10 TEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSS-- 67
          +EI FFDLETT+P    + F +LEFGAI+VCPR LVEL +++T ++P     +   SS  
Sbjct: 12 SEIAFFDLETTLPGEC-EGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSSSFL 70

Query: 68 RSDGITREAVANAPILKKL 86
          RS+GIT + + +AP    +
Sbjct: 71 RSNGITYDNIVSAPTFSDI 89