Jatropha Genome Database

JcCA0155101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155101.20 - phase: 0 
         (153 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27524.m000290 Ribulose bisphosphate carboxylase small chain, chl...   284   1e-77
30167.m000889 Ribulose bisphosphate carboxylase small chain 1B, ...   279   4e-76
29974.m000232 Ribulose bisphosphate carboxylase small chain, chl...   276   3e-75
29763.m000188 ribulose-bisphosphate carboxylase, putative             117   2e-27

>27524.m000290 Ribulose bisphosphate carboxylase small chain,
           chloroplast precursor, putative
          Length = 180

 Score =  284 bits (726), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 132/153 (86%), Positives = 140/153 (91%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS+S F VTRK N DIT+++S GG+V CMQVWPPVGKK FETLSYLPPLS++
Sbjct: 22  MVAPFTGLKSSSVFPVTRKQNNDITTLASNGGKVHCMQVWPPVGKKKFETLSYLPPLSEE 81

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
            LAKEV YLLRM  VPCLEFELEHGFVYRENHRSPGYYDGR WTMWKLPMFGCTDS+QVL
Sbjct: 82  SLAKEVDYLLRMGWVPCLEFELEHGFVYRENHRSPGYYDGRCWTMWKLPMFGCTDSSQVL 141

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KELEEAK AYPNSFIRIIGFDNKRQVQCISFIA
Sbjct: 142 KELEEAKKAYPNSFIRIIGFDNKRQVQCISFIA 174


>30167.m000889 Ribulose bisphosphate carboxylase small chain 1B,
           chloroplast precursor, putative
          Length = 181

 Score =  279 bits (713), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 129/153 (84%), Positives = 139/153 (90%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS ++F VTRK N DITSI+S GGRVQCMQVWPP+GKK FETLSYLP L+ +
Sbjct: 21  MVAPFTGLKSAASFPVTRKANNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPDLTDE 80

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           QLAKEV YLLR   +PCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGC+DS QVL
Sbjct: 81  QLAKEVDYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCSDSTQVL 140

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KEL+EAK AYPNSFIRIIGFDN+RQVQCISFIA
Sbjct: 141 KELDEAKKAYPNSFIRIIGFDNRRQVQCISFIA 173


>29974.m000232 Ribulose bisphosphate carboxylase small chain,
           chloroplast precursor, putative
          Length = 185

 Score =  276 bits (706), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 139/153 (90%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKSTSAF VTRK NTDIT++++ GGRVQCMQVWPP+GKK FETLSYLP L+++
Sbjct: 24  MVAPFTGLKSTSAFPVTRKTNTDITTLANNGGRVQCMQVWPPLGKKKFETLSYLPDLTRE 83

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           QLAKEV YLLR   VPCLEFELEHGFVYREN RSPGYYDGRYWTMWKLPMFGC+D+ QVL
Sbjct: 84  QLAKEVEYLLRKGWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCSDAVQVL 143

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KEL+EA  AYPNSF+RIIGFDN RQVQCISFIA
Sbjct: 144 KELDEAIKAYPNSFVRIIGFDNVRQVQCISFIA 176


>29763.m000188 ribulose-bisphosphate carboxylase, putative
          Length = 94

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 57/68 (83%)

Query: 85  GFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVLKELEEAKTAYPNSFIRIIGFDNKR 144
           G+V+REN R PGYYDGRYWT+WKLPMFGC DS+QVL E+ E K AYPN++IR + FDN R
Sbjct: 18  GYVHRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKKAYPNAYIRCLAFDNTR 77

Query: 145 QVQCISFI 152
           Q QC+SF+
Sbjct: 78  QAQCMSFV 85