Jatropha Genome Database

JcCA0155101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155101.10 + phase: 0 
         (113 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27524.m000289 hypothetical protein                                    120   1e-28

>27524.m000289 hypothetical protein
          Length = 122

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 77/123 (62%), Gaps = 11/123 (8%)

Query: 1   MKRQRNVEPQT-RASKAMAXXXXXXXXXXXXXXXXNGACG---------GGEPSTGVVES 50
           MKRQRN + +  +A +  +                  A G         G + S  +VE+
Sbjct: 1   MKRQRNTDSENVKAKRVESTAAPTTRITAMGKRKGKKAVGQQTEEVKTNGEDSSPRMVEN 60

Query: 51  CLNWEELAWLRRGVVDEQMSWGSIWLPFWDVEYMGEACSEMFSDVVWDYDIWNLKSIQQV 110
            +NW EL WLR G VDEQMSWGSIWLP WDVEYMGEACSEMFSDV+WDYDIWNL++I ++
Sbjct: 61  YMNWGELPWLR-GAVDEQMSWGSIWLPVWDVEYMGEACSEMFSDVIWDYDIWNLRNINEI 119

Query: 111 PNP 113
           PNP
Sbjct: 120 PNP 122