Jatropha Genome Database

JcCA0155091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155091.30 - phase: 1 /TE
         (1237 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27483.m000031 conserved hypothetical protein                          101   2e-21
28883.m000712 conserved hypothetical protein                           75   2e-13
29762.m000485 conserved hypothetical protein                           63   1e-09
30119.m000594 conserved hypothetical protein                           52   2e-06

>27483.m000031 conserved hypothetical protein
          Length = 183

 Score =  101 bits (252), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 11/86 (12%)

Query: 50  SDKATDQAI-----------QNFTTWKKADRLLRGWIIGTLSEESLGLVIGLDTAFAVWN 98
           SDK  +QA+           + F  WKK D LLRGWII TL+EE+LGLVIGLD++ +VWN
Sbjct: 23  SDKEVNQAVAILPKNRRIVKKFFLKWKKEDHLLRGWIIRTLTEETLGLVIGLDSSQSVWN 82

Query: 99  GLKESYSQVSQEREFTLCQQLTYLRK 124
            LKE+Y+  SQEREFTL QQLTYL+K
Sbjct: 83  ALKEAYAPDSQEREFTLRQQLTYLKK 108



 Score = 83.2 bits (204), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 264 RPAPPGKRRMTVAERELYRDETCQICSKKGHIAKICWWIPSSTPTESLPQALASLTLDNS 323
           RP P GK++M + ERE+Y++E  Q+C K+GHIAKICW +P  +  + LPQALA+LT+D S
Sbjct: 115 RPPPLGKKQMNIREREMYKNEYYQLCGKQGHIAKICWSLPKQSGNDELPQALAALTMDTS 174


>28883.m000712 conserved hypothetical protein
          Length = 92

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 26  VLGLAESQDLTEHITEEPPMNPAGSDKATDQAIQNFTT--WKKADRLLRGWIIGTLSEES 83
           VL   ESQDL  ++T E   +   S   T+  + N  T  W+K+DRLLRGW+IGTLSEE+
Sbjct: 8   VLAFTESQDLINYLTGEINNSATDSTTQTETTLTNNKTADWRKSDRLLRGWLIGTLSEEA 67

Query: 84  LGLVIGLDTAFAVWNGLKESYSQVS 108
           L L I  DT+ AVW+ L E+Y+Q S
Sbjct: 68  LDLDISQDTSKAVWDALNEAYAQDS 92


>29762.m000485 conserved hypothetical protein
          Length = 67

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 1  SLSLNVGNFVTLKLTQNNYLLWREQVLGLAESQDLTEHITEE 42
          S S NV NF+TLKL  +NY LWREQVL LAESQDL +H+T E
Sbjct: 3  SFSHNVSNFITLKLKPDNYPLWREQVLALAESQDLIDHLTSE 44


>30119.m000594 conserved hypothetical protein
          Length = 184

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 40/176 (22%)

Query: 3   SLNVGNFVTLKLTQNNYLLWREQ--------VLGLAESQDLTEHITEEPPMNPAGSDKAT 54
           S N+    ++KLT  NY+ W+ Q        + G+A   ++       PP     S+   
Sbjct: 30  STNIQQSFSIKLTSKNYIPWKLQFTPLFNLYLHGIANGTEVA------PPREIIDSN--V 81

Query: 55  DQAIQN--FTTWKKADRLLRGWIIGTLSEESLGLVIGLDTAFAVWNGLKESYSQVSQERE 112
           +Q+I N  +T W   D+LL        SE              VW  L  +Y  VS  + 
Sbjct: 82  NQSILNPEYTAWFAKDQLL-------FSE--------------VWRALASAYGVVSHAQR 120

Query: 113 FTLCQQLTYLRKDETVPITTHIRQFKNICDSLAAIGRPISKKEKIYSLLTSLGPQY 168
             L  +L  L KDE  P++ ++ Q K I DSL + G+ IS  E    +   LG +Y
Sbjct: 121 TQLHIELQNLSKDEK-PVSQYLYQAKAIADSLTSAGQAISTSEFNAIIFRKLGAEY 175