Jatropha Genome Database

JcCA0155011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.10 - phase: 2 /partial
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010931 conserved hypothetical protein                          130   2e-31
29929.m004658 conserved hypothetical protein                          112   3e-26

>30190.m010931 conserved hypothetical protein
          Length = 71

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 62/63 (98%)

Query: 48  IECGWKDEMKALCRAFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIRAFLVQ 107
           IECGWKDEMKALCRAFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIR FLVQ
Sbjct: 9   IECGWKDEMKALCRAFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIRTFLVQ 68

Query: 108 AAV 110
           AAV
Sbjct: 69  AAV 71


>29929.m004658 conserved hypothetical protein
          Length = 113

 Score =  112 bits (280), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 65/95 (68%), Gaps = 3/95 (3%)

Query: 1  RNSVNRPPTPDAAE---DPGKEPSLQEIINIKLIESGXXXXXXXXXXXXXIECGWKDEMK 57
          R SVNRPP P A +      +E SLQ++IN KLIESG             I+CGW DEMK
Sbjct: 5  RASVNRPPMPGADQVDVHSSQELSLQDVINSKLIESGEKERLKELLRERLIDCGWSDEMK 64

Query: 58 ALCRAFIKKKGRNNVTVDDLVHVITPKGRASIPDS 92
           LCRAF++KKGRNNVTVDDLVHVITPKGRA   +S
Sbjct: 65 DLCRAFMRKKGRNNVTVDDLVHVITPKGRAYCTES 99