Jatropha Genome Database

JcCA0154851.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154851.30 + phase: 0 /partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003393 nuclease, putative                                      169   3e-43
59505.m000053 nuclease, putative                                      138   7e-34
29168.m000389 conserved hypothetical protein                           62   5e-11
52053.m000021 hypothetical protein                                     62   6e-11

>29822.m003393 nuclease, putative
          Length = 255

 Score =  169 bits (427), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 94/110 (85%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           ME+EKD FYVVRKGD+VGIYKSL DCQAQ GSSVC+PSV+VFKGYGL K+AE++L+SHG+
Sbjct: 1   MEEEKDVFYVVRKGDVVGIYKSLRDCQAQVGSSVCNPSVSVFKGYGLAKDAEDYLVSHGI 60

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVLG 110
           K+A +SIHA DVQ DLFGK+VPCPFQQP  S GKAL+  S P+  + VLG
Sbjct: 61  KDAAFSIHATDVQPDLFGKLVPCPFQQPAFSEGKALNKDSSPKSSRGVLG 110


>59505.m000053 nuclease, putative
          Length = 262

 Score =  138 bits (347), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%)

Query: 1  MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
          ME EKDAF+VVRKGD+VG+YKS +DCQAQ GSSVCDP V+V+KGY L K+ EE+L+S GL
Sbjct: 1  MEQEKDAFFVVRKGDVVGVYKSFTDCQAQVGSSVCDPPVSVYKGYSLSKDTEEYLVSRGL 60

Query: 61 KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALD 97
          +NA Y+I A D+++DLFG +VPCPFQ+ + S     D
Sbjct: 61 QNALYAIRAQDLKEDLFGTLVPCPFQETDGSASGLTD 97


>29168.m000389 conserved hypothetical protein
          Length = 500

 Score = 62.0 bits (149), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSS 33
           ME EKDAF+VVRKGD+VG+YKS +DCQAQ GSS
Sbjct: 468 MEQEKDAFFVVRKGDVVGVYKSFTDCQAQVGSS 500


>52053.m000021 hypothetical protein
          Length = 128

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSS 33
           ME EKDAF+VVRKGD+VG+YKS +DCQAQ GSS
Sbjct: 96  MEQEKDAFFVVRKGDVVGVYKSFTDCQAQVGSS 128