Jatropha Genome Database

JcCA0154801.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154801.50 - phase: 2 /partial
         (90 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007259 similarity to glucose regulated repressor protein,...   162   3e-41

>30131.m007259 similarity to glucose regulated repressor protein,
           putative
          Length = 407

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/90 (83%), Positives = 84/90 (93%)

Query: 1   CCEEITDAAFQGLATIKTELGLKILKVSNCPKITVTGIGMLLEKCNGLEYLDVRSCPHVT 60
           CCEE+TDAAFQ L T++ +L LK+LK+SNCPKITVTGIG LLEKCN LEYLDVRSCPHVT
Sbjct: 318 CCEEVTDAAFQVLGTVENKLKLKVLKISNCPKITVTGIGRLLEKCNVLEYLDVRSCPHVT 377

Query: 61  KSGCDEAGLQFPKCCKVNYTGSLNEPDVLV 90
           KSGC+EAGLQFP+CCKVNYTGSLNEPDVL+
Sbjct: 378 KSGCEEAGLQFPECCKVNYTGSLNEPDVLI 407