Jatropha Genome Database

JcCA0154771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154771.20 - phase: 0 
         (175 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008674 trafficking protein particle complex subunit 6b, p...   347   1e-96

>30128.m008674 trafficking protein particle complex subunit 6b,
           putative
          Length = 175

 Score =  347 bits (891), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 162/175 (92%), Positives = 170/175 (97%)

Query: 1   MGREVSESCVDSLLTEMVSSYCNRFDANKPELAGRRIEAIGYQVGHQLAERYTMERPRFS 60
           MGREVSESC+DSLLTEMVSSYCNRFDANKPELAGRRIEAIGYQVGHQLAERYTMERPRFS
Sbjct: 1   MGREVSESCIDSLLTEMVSSYCNRFDANKPELAGRRIEAIGYQVGHQLAERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLARMSVDPTIESGGASQD 120
           DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDN+FRWLARMS+DP+IE+ G SQD
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSIENIGLSQD 120

Query: 121 PSALAENKATQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175
           PS L E+K+ QAMSMHLYFPCGIIRGALSNLGIPCAVSADIS+LPACSFVVRIKA
Sbjct: 121 PSVLEESKSAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISSLPACSFVVRIKA 175