Jatropha Genome Database

JcCA0154771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154771.10 - phase: 0 /pseudo
         (340 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008678 Protein FRIGIDA, putative                               118   5e-27
30128.m008679 conserved hypothetical protein                           89   3e-18
29970.m001012 Protein FRIGIDA, putative                                61   8e-10
30128.m008675 conserved hypothetical protein                           54   1e-07

>30128.m008678 Protein FRIGIDA, putative
          Length = 716

 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 71/99 (71%)

Query: 242 IQKLISKKQHIEAIGIIHAFKLANKFPPVLLLKDYLDNSXXXXXXXXXXXXSLEGQIEAR 301
           IQ LI KKQHIEAI +I+ F+L N++PPV LLKDYL  S            S++GQIEA 
Sbjct: 422 IQNLIKKKQHIEAIRVIYGFELVNEYPPVPLLKDYLHCSKNAAKRMRKADNSIKGQIEAT 481

Query: 302 EKRIADVKCALRCIGNYNIEYGPSLGSLHQMVVSLEEGN 340
            KR+AD+KCAL CI +Y IEYGPSLG L +++V+LE+ N
Sbjct: 482 NKRVADLKCALSCIQDYKIEYGPSLGDLKKLIVNLEKEN 520



 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 119/240 (49%), Gaps = 49/240 (20%)

Query: 2   EDKISSELKLTELHKQNFRQTLDQLHDSASSILLLTHQWKDIEDHLDSTHLIIEKCAKEL 61
           E  IS+EL+L EL KQ+FR+TLDQLHD ASSIL LT QWK IED  DSTH  I+   +EL
Sbjct: 4   EKTISTELQLNELKKQSFRRTLDQLHDRASSILSLTLQWKHIEDQFDSTHNSIDVRVEEL 63

Query: 62  HSLQQ-------DIKKREKELQI--------------REEEFVLNQXXXXXXXXXXXXXX 100
           HS+ +       ++KKREK+L++              RE+EF L Q              
Sbjct: 64  HSIHKAIEQKLDEVKKREKDLELVQEAVKLRFSEVEEREKEFALIQKKELHDRKREIEWI 123

Query: 101 XXSSGELETLNDKIGRKLEVLDGIQKRFESFNNDIEKRACDVKVMEGKL----------- 149
             S  EL+++  +I  KL  +D +  R   FN+ IE++A  V++   KL           
Sbjct: 124 EKSGKELDSVRVEIEDKLRAVDEVDNRLTLFNHCIEEKADQVRLSVSKLKLKEKELAFKD 183

Query: 150 -------------VREIEVKKVQCERAFNELKLKEKQIEERAKEI----ASQDESLNEQC 192
                         + + +K  +  + F E++LKEKQ+E+R +E       Q  S N  C
Sbjct: 184 ENLKEKEKKLEEHCKVLRLKDEEIHKKFKEVELKEKQLEQRYREFEELKEKQKPSNNNTC 243


>30128.m008679 conserved hypothetical protein
          Length = 173

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 99/175 (56%), Gaps = 18/175 (10%)

Query: 1   MEDKISSELKLTELHKQNFRQTLDQLHDSASSILLLTHQWKDIEDHLDSTHLIIEKCAKE 60
           ME+ ISS+LKL+EL +QNFRQT++QLHD ASSILLLT Q+K+IE H +ST   IE+ AKE
Sbjct: 1   MEETISSKLKLSELSRQNFRQTINQLHDRASSILLLTVQYKEIEGHFNSTQSSIEERAKE 60

Query: 61  LHSLQQDIKKREKELQIREEEFVLNQXXXXXXXXXXXXXXXXSSGELETLNDKIGRKLEV 120
           L S+ + + +  +E++ REE   L                     EL    +  GRK E+
Sbjct: 61  LRSIDESVGQNLEEVKKREENLEL--VKESVNVTFREIEEREKELELIQKKEIQGRKREI 118

Query: 121 LDGIQKRFESFNNDIEKRACDVKVMEGKLVREIEVKKVQCERAFNELKLKEKQIE 175
            D I+K+ E  +  +               +EI+ K+  C+R  NEL+ KEK+IE
Sbjct: 119 -DWIEKKGEEVSERL---------------KEIDAKEKLCQRILNELEEKEKRIE 157


>29970.m001012 Protein FRIGIDA, putative
          Length = 570

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%)

Query: 242 IQKLISKKQHIEAIGIIHAFKLANKFPPVLLLKDYLDNSXXXXXXXXXXXXSLEGQIEAR 301
           I+ LI   + +EA+  IHAF+LA  FPPV LLK YL +                GQI+  
Sbjct: 350 IELLIKNGKQVEAVRFIHAFQLAESFPPVPLLKTYLKDFRRNSQGKGGNIGGATGQIDIN 409

Query: 302 EKRIADVKCALRCIGNYNIEYGPSLGSLHQMVVSL 336
            + +A +K  +RC+  Y +E    L  L + V  L
Sbjct: 410 AQELATLKAVIRCVEEYKLEADYPLDPLQRRVAQL 444


>30128.m008675 conserved hypothetical protein
          Length = 63

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 5  ISSELKLTELHKQNFRQTLDQLHDSASSILLLTHQWKDIEDHLDSTHLIIEKCAKEL 61
          I+  LKL EL K++ R++ DQ H  ASSILL T QWKD+ED L+     + K A+EL
Sbjct: 4  ITENLKLAELKKESIRKSFDQAHAQASSILLFTLQWKDLEDQLNLAKDSLLKQAQEL 60