Jatropha Genome Database

JcCA0154641.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154641.20 - phase: 0 
         (398 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29732.m000319 tryptophan biosynthesis protein, trpc, putative         619   e-178

>29732.m000319 tryptophan biosynthesis protein, trpc, putative
          Length = 389

 Score =  619 bits (1596), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 311/397 (78%), Positives = 334/397 (84%), Gaps = 10/397 (2%)

Query: 1   MEGLVSPRVSIKITPALYHRPKFSIKRSMNLHTGVNRFSVASIKAQQAETKEGSATVSAA 60
           MEGLVS RVS++  P+LY  P FSIK S NL T   RFSV SI+AQQ +TKEG A V   
Sbjct: 1   MEGLVSARVSLRTAPSLYLNPNFSIKPSTNLLTLNTRFSVPSIRAQQPDTKEGLAMV--- 57

Query: 61  VKEEVPAATVENALEVKEWEVGMLQNEVAASQXXXXXXXXXXXXXLHYVGPFEFRIQNEG 120
            +EE       N L+VKEWEVGMLQNEVAASQ             LHYVGPFEFRIQNEG
Sbjct: 58  -EEE------SNVLKVKEWEVGMLQNEVAASQGIRIRRRPPTGPPLHYVGPFEFRIQNEG 110

Query: 121 NTPRNILEEIVWNKDIEVSQLKERKPLSSLKKSLDNAPPARDFIGALKEANIRTGFPGLI 180
           NTPRNILEEI+W+K  EVSQLKER+PLS LK SLDNAPP RDFIGALK AN+R GFPGLI
Sbjct: 111 NTPRNILEEIIWHKHTEVSQLKERRPLSVLKNSLDNAPPTRDFIGALKAANLRIGFPGLI 170

Query: 181 AEVKKASPSRGIIREDFDPVEIAQAYEKGGAACLSVLTDEKYFKGSFENLEAIRNAGVKC 240
           AEVKKASPSRGI+REDFDPVEIAQAYEKGGAACLSVLTDEK+FKGSFENLEAIRN+GVKC
Sbjct: 171 AEVKKASPSRGILREDFDPVEIAQAYEKGGAACLSVLTDEKFFKGSFENLEAIRNSGVKC 230

Query: 241 PLLCKEFVIDAWQIYYARTKGADAILLIAAVLPDLDIRYMTKICKMLGLAALVEVHDERE 300
           PLLCKEFVIDAWQIYYARTKGADAILLIAAVLPDLDI+YMTKICK+LGL AL+EVHDERE
Sbjct: 231 PLLCKEFVIDAWQIYYARTKGADAILLIAAVLPDLDIKYMTKICKVLGLTALIEVHDERE 290

Query: 301 MDRVXXXXXXXXXXXNNRDLETFKVDISNTKKLLQGERGEQIRQKGIIVVGESGLFTPED 360
           MDRV           NNR+LETF+VDISNT+KLL+GERG+ I+QKGIIVVGESGLFTPED
Sbjct: 291 MDRVLAIEGVELIGINNRNLETFEVDISNTRKLLEGERGQLIQQKGIIVVGESGLFTPED 350

Query: 361 IAYVQEAGVKAVLVGESIVKQSDPGKGIAGLFGKDIS 397
           IAYV EAGVKAVLVGESIVKQSDPGKGI GLFGKDIS
Sbjct: 351 IAYVHEAGVKAVLVGESIVKQSDPGKGITGLFGKDIS 387