Jatropha Genome Database

JcCA0154641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154641.10 - phase: 0 
         (129 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29732.m000318 conserved hypothetical protein                          149   2e-37
29646.m001116 conserved hypothetical protein                           66   5e-12

>29732.m000318 conserved hypothetical protein
          Length = 368

 Score =  149 bits (377), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 77/92 (83%)

Query: 11  PRLPSGYDVEYRAIADDAWYSVRTVLNGEKLTVKYDNFSDENDSIFEPQNFKSVAEIEDF 70
           P LPS YDVEYRAIADDAWYSVRTV+ GE L +KY+NF DE+DS+FEPQNFK   EIE F
Sbjct: 12  PPLPSTYDVEYRAIADDAWYSVRTVVEGETLRIKYENFGDEHDSVFEPQNFKCAEEIEIF 71

Query: 71  EKRFRPISIQLQDRECKNVPNGAVVCASHSFT 102
           EKRFRP+S QLQD+ECK +  G VVCASHSFT
Sbjct: 72  EKRFRPLSNQLQDKECKKLSVGTVVCASHSFT 103


>29646.m001116 conserved hypothetical protein
          Length = 116

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%)

Query: 19 VEYRAIADDAWYSVRTVLNGEKLTVKYDNFSDENDSIFEPQNFKSVAEIEDFEKRFRPIS 78
          +E++   D+AWY V    +G++LTV Y NFS+E D  ++   F ++ E+E+F  RFR  S
Sbjct: 1  MEFQCPEDNAWYDVNLFCDGKELTVHYTNFSEEYDEKYDVDVFNNMEELEEFRARFRLSS 60

Query: 79 IQLQDRECK 87
          +Q+QD +CK
Sbjct: 61 VQIQDHDCK 69