Jatropha Genome Database

JcCA0154561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154561.10 + phase: 0 
         (200 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006219 conserved hypothetical protein                          214   3e-56

>29908.m006219 conserved hypothetical protein
          Length = 199

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 137/208 (65%), Gaps = 17/208 (8%)

Query: 1   MGNGYNHHQNFQLYHKSTFLPMLCSRPSIKDVCVPNKLEDRSMSFSSEPLSPKIGCMGQV 60
           MGNGYNH QN  L +K+TFLPMLCSRPSIKDV +P KLEDRSMS SS+PLSPKIGCMGQV
Sbjct: 1   MGNGYNHQQNLHLQYKATFLPMLCSRPSIKDVALP-KLEDRSMSLSSDPLSPKIGCMGQV 59

Query: 61  KKHNKIIGFPTXXXXXXXXNKITFT-TRNDIPS--VKYFKLKRIFSGKNNFXXXXXXXXX 117
           K+HNKI+GFPT        NKIT T TRND  S  VKY KLKRIFS KNN          
Sbjct: 60  KRHNKIVGFPT-------PNKITLTATRNDSNSALVKYSKLKRIFSVKNNPTSTTAAIQN 112

Query: 118 XXX----GLTLDGAKGMPKIEDSKE-NSVSINIAEMDPPLPVIKKVHKPNGAGEEETLWK 172
                   + L+GA+  PKIEDS++ N VSI I +MDPPLPVIKKVHK     E +T+WK
Sbjct: 113 STTCKRGRMILNGAR-RPKIEDSRDSNPVSIRIEDMDPPLPVIKKVHKAADGEEADTIWK 171

Query: 173 RRSGGVPXXXXXXXXXXXXXXXFAPTTV 200
           RRSGG+                 APTTV
Sbjct: 172 RRSGGLALKNLQLQQIQLSRHNLAPTTV 199