Jatropha Genome Database

JcCA0154411.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.30 + phase: 0 /partial/short
         (48 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30064.m000482 gaba(A) receptor-associated protein, putative            97   1e-21
30064.m000481 gaba(A) receptor-associated protein, putative            97   1e-21
29842.m003584 gaba(A) receptor-associated protein, putative            95   6e-21
29636.m000773 gaba(A) receptor-associated protein, putative            81   8e-17
30174.m008829 gaba(A) receptor-associated protein, putative            80   2e-16
30076.m004580 autophagy 8h, putative                                   53   3e-08

>30064.m000482 gaba(A) receptor-associated protein, putative
          Length = 125

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK
Sbjct: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48


>30064.m000481 gaba(A) receptor-associated protein, putative
          Length = 120

 Score = 97.1 bits (240), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK
Sbjct: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48


>29842.m003584 gaba(A) receptor-associated protein, putative
          Length = 120

 Score = 95.1 bits (235), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/48 (95%), Positives = 48/48 (100%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKSSFKLEHPLERRQAE+ARIREKYPDRIPVIVE+AERSDIPDIDKK
Sbjct: 1  MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKK 48


>29636.m000773 gaba(A) receptor-associated protein, putative
          Length = 122

 Score = 81.3 bits (199), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKS FK EH LE+R+AE+ARIREKYPDRIPVIVE+AERSDIP+IDKK
Sbjct: 1  MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKK 48


>30174.m008829 gaba(A) receptor-associated protein, putative
          Length = 117

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 42/48 (87%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          M KSSFK EH  E+R+AE+ RIR KYPDR+PVIVE+AERSDIPDIDKK
Sbjct: 1  MTKSSFKFEHDFEKRRAEAVRIRAKYPDRVPVIVEKAERSDIPDIDKK 48


>30076.m004580 autophagy 8h, putative
          Length = 125

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 4  SSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          SSFK E   E+R  ES  I  KYPDR+PVIVER  ++D+P+++KK
Sbjct: 5  SSFKNEFTFEQRLEESNDIIAKYPDRVPVIVERYCKTDLPELEKK 49