Jatropha Genome Database

JcCA0154411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.20 + phase: 0 
         (172 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30064.m000480 conserved hypothetical protein                          236   3e-63
29591.m000136 conserved hypothetical protein                           91   2e-19
29826.m000762 conserved hypothetical protein                           52   2e-07
30131.m007009 conserved hypothetical protein                           46   7e-06

>30064.m000480 conserved hypothetical protein
          Length = 173

 Score =  236 bits (603), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 135/173 (78%), Gaps = 1/173 (0%)

Query: 1   MAPLLKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGAC 60
           MAPLLKLLDSSLR SVIPLS A+I L VTN Q+NSSYG+LKYSN+MGLKYMVCISAI A 
Sbjct: 1   MAPLLKLLDSSLRVSVIPLSAATIWLTVTNHQDNSSYGNLKYSNIMGLKYMVCISAICAS 60

Query: 61  YAFSAVACTWIRSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACN 120
           YAF A    WI+ LVNKVWLFFVSDQI+AYL VTS AA MEI+Y+AYNGDQ+VTWSEAC 
Sbjct: 61  YAFVAAVSIWIKCLVNKVWLFFVSDQIIAYLMVTSVAAAMEILYIAYNGDQKVTWSEACT 120

Query: 121 SFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPPVSSKQ-VEGNTT 172
           S+GKFC+ MK                  ISAYRAFS+++PPVSSK+ VEG+ T
Sbjct: 121 SYGKFCNGMKTALILHALTLCFFIVLAVISAYRAFSMYQPPVSSKETVEGDAT 173


>29591.m000136 conserved hypothetical protein
          Length = 205

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 5   LKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGACYAF- 63
           ++  ++ LR   +   ++++ L++ N Q N  +G L YS+L   +Y+V  + I A Y+  
Sbjct: 32  MRTAETVLRLVPMAFCISALVLMLKNSQTND-FGTLSYSDLGAFRYLVHANGICAGYSLL 90

Query: 64  SAVACTWIR-SLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACNSF 122
           SA+     R S +++ W FF  DQ++ Y+ + +AA  +E +YLA  GD  +TWS AC SF
Sbjct: 91  SAIIVAMPRPSTMSRAWTFFFLDQVLTYVILAAAAVSVEALYLARKGDIAITWSAACVSF 150

Query: 123 GKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPPVSSKQVEG 169
           G FCHK                    +S+Y+ FS +  P  S   +G
Sbjct: 151 GGFCHKAITSAVITFIVVVCYALLSLVSSYKLFSRYGAPDVSYPGKG 197


>29826.m000762 conserved hypothetical protein
          Length = 202

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 17/171 (9%)

Query: 5   LKLLDSSLRFS-------VIPLSVASICLIVTNQQENSSYG---DLKYSNLMGLKYMVCI 54
           LK++D  +R +       +  L V +  L+ T+ Q    +      +++++  L ++V  
Sbjct: 21  LKVIDKRVRLAELVLRCLICGLGVLAAVLVGTDTQVKEIFSIQKKARFTDMKALVFLVIA 80

Query: 55  SAIGACYAF-SAVACT--WIR--SLVNK--VWLFFVSDQIMAYLTVTSAAALMEIVYLAY 107
           + I A Y+    V C    +R  +L +K   W  F  DQ+MAYLTV + AA  +    A 
Sbjct: 81  NGIAAAYSLLQGVRCVVGMVRGSALFSKPLAWAIFSGDQMMAYLTVAAVAAAAQSAVFAK 140

Query: 108 NGDQEVTWSEACNSFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVF 158
            G  E+ W + CN +GKFC+++                   ISA+  F ++
Sbjct: 141 LGQPELQWMKICNMYGKFCNQVGEGIASALLVSVSMVVLSCISAFSLFRLY 191


>30131.m007009 conserved hypothetical protein
          Length = 201

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 12  LRFSVIPLSVASICLIVTNQQENSSYG---DLKYSNLMGLKYMVCISAIGACYAFSAVAC 68
            R   I  +VASI  +VT+ Q    +G     +YS     +++V  +A+  C  FS ++ 
Sbjct: 38  FRILAIAFAVASISAMVTSDQNVIVFGMDTAARYSYSSAFRFLVGANAV-VC-GFSVLSL 95

Query: 69  TWI-------RSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACNS 121
            ++        +++ K +  F+ D +M  + V+  +A   I Y+   G++E+TW+  C+ 
Sbjct: 96  IFVCLMSRRSEAILEKNYYLFLHDMVMMVMMVSGCSAATAIGYVGRYGEKEITWTAVCDF 155

Query: 122 FGKFCHK 128
            GKFC++
Sbjct: 156 VGKFCNQ 162