Jatropha Genome Database

JcCA0154191.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154191.30 - phase: 1 /partial
         (57 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001214 sterol desaturase, putative                              84   2e-17
29709.m001216 sterol desaturase, putative                              82   5e-17

>29709.m001214 sterol desaturase, putative
          Length = 617

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 44/49 (89%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSIV 49
           RR MSAWR+AGI+HALEEWKV+ECG S++ I +VW+A+L HGF+PLSIV
Sbjct: 567 RRAMSAWRIAGIIHALEEWKVNECGESIFSIHRVWEASLHHGFRPLSIV 615


>29709.m001216 sterol desaturase, putative
          Length = 622

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSIVSA 51
           RRVMSAWR AGIVH LE W V+ECGY+M+ +D+VWQA L HGFKPL ++ +
Sbjct: 569 RRVMSAWRAAGIVHGLEGWNVNECGYTMFDVDRVWQATLCHGFKPLLLIPS 619