Jatropha Genome Database

JcCA0154181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.20 - phase: 0 
         (567 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001338 DNA damage-binding protein, putative                    843   0.0  
29737.m001243 f23a5.6 protein, putative                                60   2e-09
28470.m000440 U4/U6 small nuclear ribonucleoprotein Prp4, putative     50   4e-06

>29681.m001338 DNA damage-binding protein, putative
          Length = 558

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/521 (79%), Positives = 443/521 (85%), Gaps = 11/521 (2%)

Query: 1   MAPQTRRMAFPKVVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAPQTR M FPKVVI                                             
Sbjct: 1   MAPQTRGMGFPKVVIERDTDSEQSSSSSNDEDDNENEGQSESDEQVTATKNEEDLD---- 56

Query: 61  XXXXXXXSKKKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTI 120
                  S KK KAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTI
Sbjct: 57  -------SNKKWKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTI 109

Query: 121 TCPHRVATEYGVIPAPQRNTHNPLEYVFQRQLRPHIPPIKPPFVVPDQVCCAVIRYHSRR 180
           +CPHRVA E G+I APQRNTHN L+YVFQRQLRP IP IKP +V+PDQVCCAVIRYHSRR
Sbjct: 110 SCPHRVAIENGIISAPQRNTHNTLQYVFQRQLRPSIPQIKPTYVIPDQVCCAVIRYHSRR 169

Query: 181 VTCLEFHPTKNNVLLSGDKKGQVGVWDFEKVHEKMVYGNIHTCIVNNMRFKPSNDGTVYA 240
           VTCLEFHPTKNN+LLSGDKKGQVGVWDF+KVHEKM+YGNIHTCIVNNMRF PSNDG +YA
Sbjct: 170 VTCLEFHPTKNNILLSGDKKGQVGVWDFDKVHEKMIYGNIHTCIVNNMRFNPSNDGMMYA 229

Query: 241 ASSDGTISCTDMETGISTSLMNLNPDGWQGPSSWRMLYGMDINSEKGVVLVADNFGFLYI 300
           ASSDGTISCTDMETGIS+SLMNLNPDGWQGP +WRMLYGMDIN+EKGVV+VADNFGFLY+
Sbjct: 230 ASSDGTISCTDMETGISSSLMNLNPDGWQGPRNWRMLYGMDINTEKGVVVVADNFGFLYM 289

Query: 301 VDMRSNSKTGQPILIHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWDMRRLEAGSSLCD 360
           +DMR N+K G+ ILIHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWD+R+LEAGSSLCD
Sbjct: 290 LDMRLNNKIGKEILIHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWDLRQLEAGSSLCD 349

Query: 361 LVHKRVVNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLDSPSREIVHSHDFNRHLTPFR 420
           L HKRVVNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLDSPSREIVHSHDFNRHLTPFR
Sbjct: 350 LEHKRVVNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLDSPSREIVHSHDFNRHLTPFR 409

Query: 421 AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDTSNGQLVAEVMDPNITTITPVNKLH 480
           AEWDPKDPSESLAVIGRYISENYNG ALHPIDF+D S G+LVAEVMDPNITTI+PVNKLH
Sbjct: 410 AEWDPKDPSESLAVIGRYISENYNGTALHPIDFVDVSTGKLVAEVMDPNITTISPVNKLH 469

Query: 481 PRDDILASGSSRSLFIWKPKDKSELAEQKEDRQIVICGNAE 521
           PRDDILASGSSRSLFIWKPK+KSE  E+K++++IVIC   E
Sbjct: 470 PRDDILASGSSRSLFIWKPKEKSEAVEEKDEKKIVICQGDE 510


>29737.m001243 f23a5.6 protein, putative
          Length = 530

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 143/340 (42%), Gaps = 50/340 (14%)

Query: 173 VIRYHSRRVTCLEFHPTKN-NVLLSGDKKGQVGVWDFEKVHEK---MVYGNIHTCIVNNM 228
           V R    R+  ++F P  +  ++++G+K G V  W+ +   E    +     HT  ++ +
Sbjct: 223 VARVLPGRIMVVKFLPCNDVRMIVAGNKFGNVAFWNVDSEGEDGDGIYLFRQHTGPISGI 282

Query: 229 RFKPSNDGTVYAASSDGTISCTDMETGI-------STSLMNLNPDGWQGPSSWRMLYGMD 281
            F+ S    ++ +  DG +   + E  +         ++ +L+    Q P+    LY   
Sbjct: 283 LFQQSCLSKIFTSCYDGYLRLMNAEKEVFDLVYSSDDTIFSLS----QQPNDTNGLY--- 335

Query: 282 INSEKGVVLVADNFGFLYIVDMRSNSKTGQPILIHKKGSKVVGLHCNPVHPELLLSCGND 341
                      +  G L + D R+   + Q  L H+   ++  +  N  +P ++ +   D
Sbjct: 336 ---------FGEGRGGLSVWDERTGRLSFQWDL-HE--DRINSIDFNSQNPNIMATSSTD 383

Query: 342 HFARIWDMRRLEAGS--SLCDLVHKRVVNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNL 399
             A +WD+R +      SL  + H R V+ AYFSP SGS + TTS DN + V  +   + 
Sbjct: 384 GTACLWDIRSVSPAKPKSLKIVSHNRAVHSAYFSP-SGSYLATTSPDNTVGVLST--ADF 440

Query: 400 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDTSNG 459
           +   R I H +   R ++ FRA W   D          YI   + G     +D I     
Sbjct: 441 EDTCR-IDHYNQTGRWISSFRAIWGWDDS---------YI---FIGNMKRGVDIISRPQR 487

Query: 460 QLVAEVMDPNITTITPVNKLHPRDDILASG--SSRSLFIW 497
           + +  +  P+++ I      HP +  + +G  S   ++IW
Sbjct: 488 RAILTLQSPHMSAIPCRFDAHPYNVGMLAGATSGGQVYIW 527


>28470.m000440 U4/U6 small nuclear ribonucleoprotein Prp4, putative
          Length = 541

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 24/233 (10%)

Query: 163 FVVPDQVCCAVIRYHSRRVTCLEFHPTKNNVLLSGDKKGQVGVWDFEKVHEKMVYGNIHT 222
           + +P     + ++ H+ R T + F P  NN L +        +W+ +     +V G  H 
Sbjct: 276 WSMPQVRKVSTLKGHTERATDIVFSPVHNNHLATASADRTAKLWNTDG----LVLGTFHG 331

Query: 223 CI--VNNMRFKPSNDGTVYAASSDGTISCTDMETGISTSLMNLNPDGWQGPSSWRMLYGM 280
            +  +  + F PS    +   S D T    D++TG    L        +G S  R +YG+
Sbjct: 332 HLDRLARIAFHPSGK-YLGTTSFDKTWRLWDVDTGAELLLQ-------EGHS--RSVYGL 381

Query: 281 DINSEKGVVLVADNFGFLYIVDMRSNSKTGQPILIHKKGSK-VVGLHCNPVHPELLLSCG 339
             + +  +           + D+R    TG+ +L  +   K V+G+  +P +   L + G
Sbjct: 382 AFHHDGSLAGSCGLDALARVWDLR----TGRSVLALEGHVKPVLGISFSP-NGYHLATGG 436

Query: 340 NDHFARIWDMRRLEAGSSLCDLVHKRVVNCAYFSPLSGSKILTTSQDNRLRVW 392
            D+  RIWD+R+ +  S      H  +++   F P  G  ++T S D   +VW
Sbjct: 437 EDNTCRIWDLRKKK--SLYIIPAHSNLISQVKFEPQEGYCLVTASYDMTAKVW 487