Jatropha Genome Database

JcCA0154181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.10 - phase: 0 /partial
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001339 ATP-binding cassette transporter, putative              139   4e-34

>29681.m001339 ATP-binding cassette transporter, putative
          Length = 1433

 Score =  139 bits (349), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 83/96 (86%)

Query: 1  MAAALNGTEYLEVQIDPGRESFARPSNADSVREDEAELQWQAIARLPSQKRSNFSLLRRS 60
          MAAA++GTEYLE+QID  RESFAR SNA+SV+EDE EL W+AI+RLPSQ+R NF+LLRRS
Sbjct: 1  MAAAMDGTEYLELQIDHFRESFARASNAESVQEDEDELLWEAISRLPSQRRGNFALLRRS 60

Query: 61 STDYSHGGEESRMEMIDVTKLDRANRELVVRKALAT 96
          +++Y+  G   R E IDVT+LDRANRELVV+KALAT
Sbjct: 61 ASEYAEDGSGKRTETIDVTRLDRANRELVVKKALAT 96