Jatropha Genome Database

JcCA0154091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154091.30 + phase: 0 
         (196 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002363 Transcription factor RF2b, putative                     199   7e-52
29804.m001495 Transcription factor RF2b, putative                     103   6e-23
29577.m000449 Transcription factor RF2a, putative                      62   1e-10

>29729.m002363 Transcription factor RF2b, putative
          Length = 355

 Score =  199 bits (506), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 110/145 (75%), Gaps = 17/145 (11%)

Query: 27  FSFRSSGHRRAHSEVHFRLQEDLDLVTDPFEGPSGSSFDELGSEDDLFCTYMDIEKLGSR 86
           FSF    HRRAHSEVHFRL EDLDLV DPFEGPSGSSFDELGSEDD+FC YM IEKLGSR
Sbjct: 31  FSF----HRRAHSEVHFRLPEDLDLVPDPFEGPSGSSFDELGSEDDIFCAYMGIEKLGSR 86

Query: 87  PEEG-PSGLKLDNAVNGLTDXXXXXXXXXXXXXXDADEEKNVRPRHRYSNSVDGSSFLES 145
           P+EG  S L +DN   GL                + D +KN RPRHRYSNSVDGSS LES
Sbjct: 87  PQEGSSSALNIDNGDGGL------------HVPSEVDADKNARPRHRYSNSVDGSSMLES 134

Query: 146 IEAKKAMAPDKLAELWTLDPKRAKR 170
           IEAKKAMAPDKLAELW+LDPKRAKR
Sbjct: 135 IEAKKAMAPDKLAELWSLDPKRAKR 159


>29804.m001495 Transcription factor RF2b, putative
          Length = 386

 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 83/162 (51%), Gaps = 39/162 (24%)

Query: 34  HRRAHSEVHFRLQEDLDLV------TDPFEGPSGSS-------------------FDELG 68
           HRRAHSE+ FRL ED+  +      +DP  G                        F+E+G
Sbjct: 45  HRRAHSEMSFRLPEDVTTMMMDLSPSDPINGGGPGGGGGGGVGGGGGGGGSSVGSFEEMG 104

Query: 69  SEDDLFCTYMDIEKLGSRPEEGPSGLKLDNAVNGLTDXXXXXXXXXXXXXXDADEEKNVR 128
           SEDDLF TY+D++KL                 NG TD              + ++    R
Sbjct: 105 SEDDLFSTYIDVDKL-------------TGGGNG-TDQSNNNNNNNDEKNGEGEKGMPTR 150

Query: 129 PRHRYSNSVDGSSFLESIEAKKAMAPDKLAELWTLDPKRAKR 170
           P+HR+SNSVDGS   E +EAKKAM PDKLAELW+LDPKRAKR
Sbjct: 151 PKHRHSNSVDGSVCGEVMEAKKAMPPDKLAELWSLDPKRAKR 192


>29577.m000449 Transcription factor RF2a, putative
          Length = 425

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 19/153 (12%)

Query: 33  GHRRAHSEVHFRLQEDLDLVTD--PFEGPSGSSFDELGSEDDLFCTYMDIEKLGSRPEEG 90
           GHRRAHSE+   L +D+   +D     G  G SF +  +E+DLF  Y+D++K  S     
Sbjct: 79  GHRRAHSEI-LTLPDDISFDSDLGVVGGADGPSFSD-ETEEDLFSMYLDMDKFNS--SSA 134

Query: 91  PSGLKL-DNAVNGLTDXXXXXXXXXXXXXXDADEEKNVRPRHRYSNSVDGSSFLES---- 145
            S  +L ++++                    A   +  R RH++S S+DGS+ ++     
Sbjct: 135 TSAFQLGESSIPTPAALASASAQAPATVDVGAGPSERPRIRHQHSQSMDGSTTIKPEMLI 194

Query: 146 --------IEAKKAMAPDKLAELWTLDPKRAKR 170
                    + KKAM+  KLAEL  +DPKRAKR
Sbjct: 195 SGAEEVSPADTKKAMSAAKLAELALIDPKRAKR 227