Jatropha Genome Database

JcCA0154071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154071.20 - phase: 0 
         (189 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002021 conserved hypothetical protein                          125   2e-29

>29647.m002021 conserved hypothetical protein
          Length = 193

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 106/192 (55%), Gaps = 4/192 (2%)

Query: 1   MKNRSLGKDEENKTKINSSASISMKKKKNMM--RLGGPALSLEAFANAKSTRNKYNPALI 58
           MKNR+  KDE    K N + S+ MKKKK     RLGG  LSLE FANAKS+ + YNPA+I
Sbjct: 1   MKNRNSNKDEGKNEKFNGTKSMDMKKKKKKNMMRLGGQGLSLEVFANAKSSSSHYNPAVI 60

Query: 59  KKQREFYKNAKYVSKFKKKLRQQNQQTET-SSVVTNLED-NNETGXXXXXXXXXXXXXXX 116
           KKQREFYKNAKYVSKFKKK++QQ  Q +  SS V +LED ++E+G               
Sbjct: 61  KKQREFYKNAKYVSKFKKKIKQQQSQPDNLSSAVKSLEDKDDESGEDRNMVKKNKKKKNG 120

Query: 117 XXXXXXXXXXQHXXXXXXXXXXXXFIXXXXXXXXXXXXXXXXXXXXMFKKTRHGQPVMKY 176
                     QH             I                    MFKKTRHGQPVMKY
Sbjct: 121 SHSLRELYEKQHQEKEKARTEREAIIKAKKEEREKAEAHRKAEREKMFKKTRHGQPVMKY 180

Query: 177 RIEHLLQTIQGS 188
           RIEHLLQTIQGS
Sbjct: 181 RIEHLLQTIQGS 192