Jatropha Genome Database

JcCA0153841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153841.10 + phase: 0 
         (225 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29801.m003083 conserved hypothetical protein                          409   e-115
29801.m003084 conserved hypothetical protein                          295   9e-81
29682.m000602 conserved hypothetical protein                           47   8e-06

>29801.m003083 conserved hypothetical protein
          Length = 225

 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/225 (85%), Positives = 210/225 (93%)

Query: 1   MFAQAFLLSLLVTLATIQGNHAVDYTVTNTATSTAGGARFTTDIGEDYAKKTLSAATDFI 60
           M     +LSLLVTLATIQGN+AV+YTVTNTA STAGGARF+ +IGEDY+ +TLSAATDFI
Sbjct: 1   MSPHTLILSLLVTLATIQGNYAVEYTVTNTAGSTAGGARFSAEIGEDYSLQTLSAATDFI 60

Query: 61  WRVFQQVNAEDRKDVQQVSLFIDDMDGVAYASNNEIHVSANYIGNYSGDLVREFSGVIYH 120
           WR+FQQ NAEDRK+VQ+VSLFIDDMDGVAYASNNEIHVSA YIG YSGDL RE++GVIYH
Sbjct: 61  WRLFQQPNAEDRKNVQKVSLFIDDMDGVAYASNNEIHVSARYIGGYSGDLKREYTGVIYH 120

Query: 121 EMTHIWQWNGNGQTPVGLIEGIADFVRLKANYAPSHWVQPGQGDKWDQGYDVTARFLDYC 180
           EMTHIWQWNGNGQ P GLIEGIADFVRLKANYAPSHWVQPGQGD+WDQGYDVTARFLDYC
Sbjct: 121 EMTHIWQWNGNGQAPGGLIEGIADFVRLKANYAPSHWVQPGQGDRWDQGYDVTARFLDYC 180

Query: 181 NDLRNGFVAELNKKMRTGYSNQYFVDLLGKSVDQLWSDYKAKYAR 225
           NDLRNGFVAELNKKM+ GYS+Q+FVDLLGKSVDQLWSDYKAKYA+
Sbjct: 181 NDLRNGFVAELNKKMKDGYSDQFFVDLLGKSVDQLWSDYKAKYAK 225


>29801.m003084 conserved hypothetical protein
          Length = 210

 Score =  295 bits (756), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 164/204 (80%), Gaps = 1/204 (0%)

Query: 23  VDYTVTNTATSTAGGARFTTDIGEDYAKKTLSAATDFIWRVFQQVNAEDRKDVQQVSLFI 82
           V Y V N A ++ GG RF  +IG + + KTL+ AT FIW++       +RK   ++SL I
Sbjct: 7   VQYQVINKAETSTGGVRFAGEIGVELSNKTLTEATGFIWKLLDLNILRNRKCAARISLII 66

Query: 83  DDMDGVAYASNNEIHVSANYIGNYSGDLVR-EFSGVIYHEMTHIWQWNGNGQTPVGLIEG 141
           +D+DGVAY  +NE+H+S  YI N S + +R E +G++YHE THIWQWNGNGQTP GLIEG
Sbjct: 67  EDIDGVAYTEDNEMHISTRYIENCSRECLRSEVTGILYHETTHIWQWNGNGQTPGGLIEG 126

Query: 142 IADFVRLKANYAPSHWVQPGQGDKWDQGYDVTARFLDYCNDLRNGFVAELNKKMRTGYSN 201
           IADFVRLKANYAPSHWVQPGQGD+WDQGYDVTARFLDYCNDLRNGFVAELNKKM   YS+
Sbjct: 127 IADFVRLKANYAPSHWVQPGQGDRWDQGYDVTARFLDYCNDLRNGFVAELNKKMIDDYSD 186

Query: 202 QYFVDLLGKSVDQLWSDYKAKYAR 225
           ++F++LLGKSVDQLWSDYKAKYA+
Sbjct: 187 EFFIELLGKSVDQLWSDYKAKYAK 210


>29682.m000602 conserved hypothetical protein
          Length = 283

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 21/212 (9%)

Query: 15  ATIQGNHAVDYTVTNTATSTAGGARFTTD-IGEDYAKKTLSAATDFIWRVFQQVNAEDRK 73
           A  + +   D TV N    T+ G RFT   I  D A + +   +  +  +    +   +K
Sbjct: 57  ANYEASKGFDITVVNDIKDTSAGKRFTLLYISNDKAIRIIQNTSAIVENILYPNSNHSKK 116

Query: 74  DVQQVSLFI---DDMDGVAYASNNEIHVSANYIGNYSGD---LVREFSGVIYHEMTHIWQ 127
            V  V+L +        +     N  H  A +I + S D   L  E + ++   M  IW 
Sbjct: 117 KVSHVTLRLISRTHQTSLVRVITNTNHEYAIHIVSPSSDTKNLDSEITLMVLQGMARIWI 176

Query: 128 WN-GNGQTPVGLIEGIADFVRLKANYAPSHWVQPGQGDKWDQGYD---------VTARFL 177
           W+ G    P  L++G+ ++++  A +A       G G   + G+          V     
Sbjct: 177 WDDGKPMAPSWLLDGLVEYIKKAAGFADMR----GSGQVPELGHFCLGHRDPRYVAETLE 232

Query: 178 DYCNDLRNGFVAELNKKMRTGYSNQYFVDLLG 209
            Y  ++  GF+  LN+ ++ G+ +    D LG
Sbjct: 233 HYEKNVTKGFIQRLNQGLKYGWHDLTVDDALG 264