Jatropha Genome Database

JcCA0153811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153811.20 + phase: 0 /partial
         (245 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29905.m000424 conserved hypothetical protein                          321   2e-88

>29905.m000424 conserved hypothetical protein
          Length = 586

 Score =  321 bits (823), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 177/202 (87%), Gaps = 3/202 (1%)

Query: 45  GVVPLGNIGTLAGISLPGLASVSGAYLTN-QLVASCATVPPVFQVPSAPLNNGVVVSRPN 103
           GVVPL N+G+LAGISLPG+ASVSGA LTN QLVA+ A++P +FQVPS P       ++ N
Sbjct: 6   GVVPLANMGSLAGISLPGIASVSGALLTNSQLVANSASIPTMFQVPSIP--QITTTTKAN 63

Query: 104 QPKIQDELIIAREIVINDAESSVRYKLTKRQTQEEIQKCTGAVVITRGKYRPLNTPPDGE 163
           QPKIQDEL IAREIVINDAESS+RYKLTKRQT EEIQKCTGAVVITRGKYR  N PPDGE
Sbjct: 64  QPKIQDELTIAREIVINDAESSIRYKLTKRQTHEEIQKCTGAVVITRGKYRLPNAPPDGE 123

Query: 164 KPLYLHISSGAHLKDTAERILAVDRAAAMIEEMLKQSPNLQSAPSIFPIAGGSGLKALST 223
           KPLYLHISSGAHLKDTAERILAVDRAAAM+EE+LKQ PNLQ A S+ P+A GSG+KALST
Sbjct: 124 KPLYLHISSGAHLKDTAERILAVDRAAAMVEEILKQGPNLQPALSVVPVASGSGVKALST 183

Query: 224 CVFLGFDADSSLNIAARIRGPN 245
           CV+LGFDAD SLNIAARIRGP+
Sbjct: 184 CVYLGFDADESLNIAARIRGPD 205