Jatropha Genome Database

JcCA0153601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153601.10 - phase: 0 
         (280 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28565.m000328 undecaprenyl diphosphate synthase, putative             270   8e-73
29830.m001441 undecaprenyl diphosphate synthase, putative             258   2e-69
28565.m000330 undecaprenyl diphosphate synthase, putative             258   3e-69
28565.m000331 undecaprenyl diphosphate synthase, putative             257   4e-69
29681.m001337 undecaprenyl pyrophosphate synthetase, putative         139   2e-33
34670.m000028 undecaprenyl pyrophosphate synthetase, putative          75   5e-14

>28565.m000328 undecaprenyl diphosphate synthase, putative
          Length = 331

 Score =  270 bits (689), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 157/322 (48%), Positives = 191/322 (59%), Gaps = 56/322 (17%)

Query: 14  ASFIRSCLFHVLSVGPIPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFSALMLILKYCYEL 73
            S I  C+F VLS+GPIP HL+F+MDGNRRFAKKE L  GAGHKAG SAL+ ILKYCY+L
Sbjct: 9   GSLITRCIFGVLSMGPIPGHLSFLMDGNRRFAKKENLETGAGHKAGSSALITILKYCYDL 68

Query: 74  GVKYVTVYAFSIDNFRRRPEEVKIVMDLMLEKIEGILKEESVVNQYGIRVYFLGNLNLLT 133
            VKYVTVYAFSI+NF R P EV+ VMDLMLE  EG+LKEESVV+Q+GIRV+F+GNL LL 
Sbjct: 69  RVKYVTVYAFSIENFNRPPHEVQTVMDLMLETTEGLLKEESVVHQHGIRVHFIGNLKLLD 128

Query: 134 EPVRVAAQKVMKATASNTKCLLFICVAYTSLDEIIHAVHESCKDKLIK-----------N 182
           +P+RVAA+KVM+AT+ NTK +L ICVAY+S DEIIHAV ESCK+K  K            
Sbjct: 129 KPLRVAAEKVMRATSKNTKYVLLICVAYSSSDEIIHAVQESCKEKWNKIEHSKVSRGEVK 188

Query: 183 TIFPDKPCTDAIEGEEKDSIKLVDLEKHMYMALGPEPDVLIRTSGESRLSNF-------- 234
               +K   +A     ++  K V          G + D   +   E+R  N         
Sbjct: 189 VEVGNKNTDNATTCGAREICKNVTANASQRSGFGDKWDDEGQALWETRTGNRDEERAKMQ 248

Query: 235 -----------------------LLWQTSHCTLYSPDALW--------------PEIGLW 257
                                  +L +TS  T  S   LW              PE GL 
Sbjct: 249 SHSIIKQVDVEKPMYMAVAPDPDILIRTSGETRLSNFLLWQASNCPLYSPDVLWPEFGLR 308

Query: 258 NLVWAVLNFQRNHSYLEKKKKR 279
           +LVWAVLNFQR+H+YLEKKK +
Sbjct: 309 HLVWAVLNFQRSHAYLEKKKNQ 330


>29830.m001441 undecaprenyl diphosphate synthase, putative
          Length = 381

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/177 (73%), Positives = 153/177 (86%), Gaps = 6/177 (3%)

Query: 2   ELICNIEPMGVLASFIRSCLFHVLSVGPIPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFS 61
           EL C+      L SF+R C+F +LSVGPIP+H+AFIMDGNRR+AKKE +  GAGH+AGFS
Sbjct: 11  ELFCS------LVSFMRICMFRILSVGPIPNHIAFIMDGNRRYAKKENMKEGAGHRAGFS 64

Query: 62  ALMLILKYCYELGVKYVTVYAFSIDNFRRRPEEVKIVMDLMLEKIEGILKEESVVNQYGI 121
           AL+ ILKYCYELGVKYVTVYAFSIDNF+RRP+EV+ +MDLMLEKIE +LKEES+VNQYGI
Sbjct: 65  ALISILKYCYELGVKYVTVYAFSIDNFKRRPDEVQDLMDLMLEKIEELLKEESIVNQYGI 124

Query: 122 RVYFLGNLNLLTEPVRVAAQKVMKATASNTKCLLFICVAYTSLDEIIHAVHESCKDK 178
           RVYF+GNL LL EPVR+AA+KVM+ATA+NTKC   IC+AYTS DEI+HAV ESCK K
Sbjct: 125 RVYFIGNLTLLNEPVRIAAEKVMRATANNTKCTFLICIAYTSCDEIVHAVQESCKFK 181



 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 76/109 (69%), Gaps = 8/109 (7%)

Query: 168 IHAVHESCKDKLIKN-TIFPDKPCTDAIEGEEKDS-------IKLVDLEKHMYMALGPEP 219
           + A    C++K  K+ T+  +K     +  EE +        IKLVD+E++MYMA+ PEP
Sbjct: 237 VPAAQGLCENKWDKDQTLTKNKTENGVLPSEESEKMQGACSLIKLVDIERNMYMAVAPEP 296

Query: 220 DVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVWAVLNFQR 268
           D+LIR+SGE+RLSNFLLWQ S C LYSPDALWPEIG  +LVW V+NFQ+
Sbjct: 297 DILIRSSGETRLSNFLLWQASDCMLYSPDALWPEIGFQHLVWVVINFQQ 345


>28565.m000330 undecaprenyl diphosphate synthase, putative
          Length = 370

 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 145/168 (86%)

Query: 11  GVLASFIRSCLFHVLSVGPIPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFSALMLILKYC 70
           G LASF+R  +F VL  GPIPSHL+ IMDGNRRF KKE L PGAG++AGFSALM +LKYC
Sbjct: 14  GHLASFMRRSIFRVLCNGPIPSHLSVIMDGNRRFTKKENLKPGAGYRAGFSALMSMLKYC 73

Query: 71  YELGVKYVTVYAFSIDNFRRRPEEVKIVMDLMLEKIEGILKEESVVNQYGIRVYFLGNLN 130
           YELGVKYVT++AF IDNF+RR +EV+++MDLMLEK  G+LKEES+V+QYG+RVYF+GNL 
Sbjct: 74  YELGVKYVTIFAFGIDNFKRRSDEVQVIMDLMLEKTLGMLKEESIVHQYGVRVYFIGNLK 133

Query: 131 LLTEPVRVAAQKVMKATASNTKCLLFICVAYTSLDEIIHAVHESCKDK 178
           LL EP+RVAA+KVM+ T++NTK +L ICVAY+S DEI HAV ESC++K
Sbjct: 134 LLDEPLRVAAEKVMRTTSNNTKFVLLICVAYSSTDEIAHAVQESCQEK 181



 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 67/78 (85%)

Query: 202 IKLVDLEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVW 261
           IK VDL+KHMYMA+ P+PD+LIRT+GE+RLSNFLLWQ   C LYSPD LWPE GL +LVW
Sbjct: 292 IKQVDLQKHMYMAVAPDPDILIRTAGETRLSNFLLWQAGDCPLYSPDVLWPEFGLRHLVW 351

Query: 262 AVLNFQRNHSYLEKKKKR 279
           AVLNFQR+ +Y EKKKK+
Sbjct: 352 AVLNFQRSCAYSEKKKKQ 369


>28565.m000331 undecaprenyl diphosphate synthase, putative
          Length = 363

 Score =  257 bits (657), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 155/191 (81%), Gaps = 5/191 (2%)

Query: 10  MGVLASFIRSCLFHVLSVGPIPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFSALMLILKY 69
           +G LASF+R  +FHVL +GPIPSHL+FIMDGNRRF KKE L PGAG++AGF ALM +LKY
Sbjct: 5   LGRLASFMRQSIFHVLRMGPIPSHLSFIMDGNRRFTKKENLKPGAGYRAGFLALMSMLKY 64

Query: 70  CYELGVKYVTVYAFSIDNFRRRPEEVKIVMDLMLEKIEGILKEESVVNQYGIRVYFLGNL 129
           CYELGVK+VT++AF IDNF+RRP+EV+ +MDL+LEK  G+LKEES+V+QYGIRV+F+GNL
Sbjct: 65  CYELGVKHVTIFAFGIDNFKRRPDEVRFIMDLILEKTLGLLKEESIVHQYGIRVHFIGNL 124

Query: 130 NLLTEPVRVAAQKVMKATASNTKCLLFICVAYTSLDEIIHAVHESCKDKLIKNTIFP--- 186
            LL EP+RVAA+KV + T+SNTK +L ICVAY+S +EI HAV + CK+K   N I P   
Sbjct: 125 KLLDEPLRVAAEKVTRTTSSNTKFVLLICVAYSSTNEITHAVQQYCKEKW--NEIEPSNY 182

Query: 187 DKPCTDAIEGE 197
           DK   D ++ E
Sbjct: 183 DKVSNDLVKVE 193



 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 66/78 (84%)

Query: 202 IKLVDLEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVW 261
           IK VDLEKHM MA+ P+PD+LIRTSGE+RLSNFLLWQ   C  YSPDALWP+I L  LVW
Sbjct: 285 IKQVDLEKHMPMAVAPDPDILIRTSGETRLSNFLLWQAGDCQGYSPDALWPDIVLRQLVW 344

Query: 262 AVLNFQRNHSYLEKKKKR 279
           AVLNFQ N++YLEKKKK+
Sbjct: 345 AVLNFQYNYAYLEKKKKQ 362


>29681.m001337 undecaprenyl pyrophosphate synthetase, putative
          Length = 310

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 134/238 (56%), Gaps = 17/238 (7%)

Query: 30  IPSHLAFIMDGNRRFAKKEKLGPGAGHKAGFSALMLILKYCYELGVKYVTVYAFSIDNFR 89
           +P H+A IMDGN R+AK++   P  GH+AG  +LM I+  C   G+K +TV+AFS +N+ 
Sbjct: 78  MPRHVAVIMDGNGRWAKQQGWPPSKGHEAGVRSLMEIMNLCGHWGIKVLTVFAFSCENWT 137

Query: 90  RRPEEVKIVMDLMLEKIEGILKEE-SVVNQYGIRVYFLGNLNLLTEPVRVAAQKVMKATA 148
           R     K+ +D ++   E +LK E   + + GIRV  +G+++ L E ++   ++V   T 
Sbjct: 138 R----PKVEIDFLMSLFERVLKSELENLLREGIRVSIIGDVSKLPESLQRLIREVEDTTK 193

Query: 149 SNTKCLLFICVAYTSLDEIIHAVHESCKDKLIKNTIFPDKPCTDAIEGEEKDSIKLVDLE 208
             +K  L + V+Y+   +++ A   +   ++ +  I P+    D IE E +      +  
Sbjct: 194 DYSKLHLLVAVSYSGKYDVVKACR-NIAGRVKEGAIEPEDISEDLIEQELE-----TNCS 247

Query: 209 KHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVWAVLNF 266
           +H      P PD+LIRTSGE R+SNFLLWQ ++  LY  + LWP+ G    V A+ +F
Sbjct: 248 EH------PSPDLLIRTSGELRISNFLLWQLAYTELYFAEELWPDFGKDGFVEALTSF 299


>34670.m000028 undecaprenyl pyrophosphate synthetase, putative
          Length = 165

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 24/163 (14%)

Query: 109 ILKEESVVNQYGIRVYFLGNLNLLTEPVRVAAQKVMKATASNTKCLLFICVAYTSLDEII 168
           I ++ + +++  +RV  +G+   L + +R   ++  + T  NT   L I   Y + DEI 
Sbjct: 3   IRRDLAELHKENVRVRVIGDRVGLKDDIRALLEEAEQTTRDNTALTLIIAFNYGARDEIA 62

Query: 169 HAVHESCKD----KLIKNTIFPDKPCTDAIEGEEKDSIKLVDLEKHMYMALGPEPDVLIR 224
            A     +D    +L  + I PD                   +   +  A  P+PD++IR
Sbjct: 63  RAAASLARDVAEGRLDASAITPDA------------------ISARLDTAGIPDPDLIIR 104

Query: 225 TSGESRLSNFLLWQTSHCT-LYSPDALWPEIGLWNLVWAVLNF 266
           TSGE RLSNFLLWQ ++   L+ PD  WP+     LV A+  +
Sbjct: 105 TSGEERLSNFLLWQAAYSEFLFIPD-YWPDFNRQTLVAAIDQY 146