Jatropha Genome Database

JcCA0153321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153321.10 - phase: 0 
         (588 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

31200.m000015 DNA ligase, NAD-dependent, putative                      61   1e-09
30190.m011152 replication factor C / DNA polymerase III gamma-ta...    52   6e-07
29908.m006177 hypothetical protein                                     50   3e-06
29904.m002972 chromosome transmission fidelity factor, putative        49   5e-06

>31200.m000015 DNA ligase, NAD-dependent, putative
          Length = 491

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 203 LAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKELG 262
           L GLTFVI+GTL S +RE  +  I+  GG+V+GSVSKKTNYLL   +  G K +KA+E+G
Sbjct: 419 LTGLTFVITGTL-SRDRESFKATIEAAGGKVSGSVSKKTNYLLAGAE-AGTKLAKAQEMG 476

Query: 263 TPFLTE 268
              L E
Sbjct: 477 VTILDE 482


>30190.m011152 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 333

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 40/149 (26%)

Query: 341 LPWTEKYRPKAPNDIIGNQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQNDSGAKKAVLLS 400
           +PW EKYRP    DI+GN+  V++L    ++                    G    ++LS
Sbjct: 15  VPWVEKYRPSKICDIVGNEDAVSRLQVIARD--------------------GNMPNLILS 54

Query: 401 GTPGIGKTTAA-KLVSRMLG----FQAIEVNASDSRGKADNKISKGIGGSNANCIKELVS 455
           G PG GKTT+   L   +LG       +E+NASD RG    +          N IK    
Sbjct: 55  GPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR----------NKIKMFAQ 104

Query: 456 NEALGVNMDRSKHPKTVLIMDEVDGMSAG 484
            +   V +   +H   V+I+DE D M++G
Sbjct: 105 KK---VTLPPGRH--KVVILDEADSMTSG 128


>29908.m006177 hypothetical protein
          Length = 1247

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 21/113 (18%)

Query: 343 WTEKYRPKAPNDIIGNQSLVNQLHSWLKNW--------------------DEQFLGTGNK 382
           WT+KY+PK   ++ GN   V  L  WL+ W                    D  +    + 
Sbjct: 346 WTDKYQPKKSTELCGNDDSVKILSEWLRTWCRRGRQANRDEPGGDECDIQDPDYNCFRDD 405

Query: 383 GKSKKQNDSGAKKAVLL-SGTPGIGKTTAAKLVSRMLGFQAIEVNASDSRGKA 434
             S+  ++ G+ K VLL +G  G GK+ A    ++  GF+ +E +AS+ R  A
Sbjct: 406 SDSENISEEGSFKNVLLITGPVGSGKSAAIYACAKEQGFRVLEASASECRNGA 458


>29904.m002972 chromosome transmission fidelity factor, putative
          Length = 813

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 17/107 (15%)

Query: 385 SKKQNDSG--AKKAVLLSGTPGIGKTTAAKLVSRMLGFQAIEVNASDSRGKADNKISKGI 442
           SKK   +G   +K +LL G PG+GKTT A + ++  G++ +EVNASD R  +  + +K +
Sbjct: 316 SKKSRLTGPPEQKILLLCGPPGLGKTTLAHVAAKHCGYRVVEVNASDDRSSSTIE-AKIL 374

Query: 443 GGSNANCIKELVSNEALGVNMDRSKHPKTVLIMDEVDGMSAGDRGGV 489
                N I            M  S+ PK  L++DE+DG     +G V
Sbjct: 375 DVVQMNSI------------MADSR-PKC-LVIDEIDGALGDGKGAV 407