Jatropha Genome Database

JcCA0152991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152991.20 + phase: 2 /partial
         (154 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004630 conserved hypothetical protein                          269   4e-73
29841.m002849 conserved hypothetical protein                          189   4e-49
28320.m001144 conserved hypothetical protein                          184   2e-47
30078.m002268 conserved hypothetical protein                           98   1e-21
29745.m000363 conserved hypothetical protein                           91   2e-19

>29848.m004630 conserved hypothetical protein
          Length = 173

 Score =  269 bits (688), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 137/154 (88%)

Query: 1   GCFGCCAKPSTINAVDQSSKGLRIKDERAKQHSIPDDFWSSSAGDMDYSGVQSQRSASSI 60
           GCFGCC KPST   VD SSKGLR +++ AKQ  I DDFWS+SAG+MDYSGVQSQRS SSI
Sbjct: 20  GCFGCCIKPSTSITVDNSSKGLRNQEQTAKQLGISDDFWSTSAGEMDYSGVQSQRSVSSI 79

Query: 61  SALNQPFDPSANAGSTSNPSEFVNYGLLLWKQTRQQWLANKRSPNKKQVREPTIRWNATY 120
           S LNQPFDP  NAGSTSNPSEFVN+GLLLWKQTRQQWLANK+SPNK QVREPT+ WNATY
Sbjct: 80  STLNQPFDPYTNAGSTSNPSEFVNHGLLLWKQTRQQWLANKKSPNKTQVREPTLSWNATY 139

Query: 121 ENLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           ENLLG+NKPFPR IPLAEMVDFLVDVWEQEGLYD
Sbjct: 140 ENLLGTNKPFPRRIPLAEMVDFLVDVWEQEGLYD 173


>29841.m002849 conserved hypothetical protein
          Length = 190

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 118/155 (76%), Gaps = 2/155 (1%)

Query: 1   GCFGCCAKPSTINAVDQSSKGLRIKDERAKQHSIPDDFWSSSAGDMDYSGVQSQRSASSI 60
           GC G C KP  +  +D+ SKG  I+ +  K+ SI +DFW++S  DMD S VQSQ S SSI
Sbjct: 37  GCLGSCKKPR-LTLIDEQSKGSNIQGQTVKKPSISEDFWTTSTCDMDNSAVQSQGSMSSI 95

Query: 61  SALNQPFDPSANAGSTSNPSEFVNYGLLLWKQTRQQWLANKRSPNK-KQVREPTIRWNAT 119
           S +NQ  D   ++ S S PS+FVN+GL++W QTRQ+W+ +K+S N+ +Q REP + WNAT
Sbjct: 96  STVNQTLDLHGSSSSGSAPSQFVNHGLIVWNQTRQRWVGDKKSLNRARQSREPKLNWNAT 155

Query: 120 YENLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           YE+LLGSNKPFPRPIPL+EMVDFLVD+WEQEG+YD
Sbjct: 156 YESLLGSNKPFPRPIPLSEMVDFLVDIWEQEGMYD 190


>28320.m001144 conserved hypothetical protein
          Length = 173

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 108/155 (69%), Gaps = 3/155 (1%)

Query: 1   GCFGCCAKPSTINAVDQSSKGLRIKDERAKQHSIPDDFWSSSAGDMDYSGVQSQRSASSI 60
           GCFGCCAKP+ I AVD+ SKGLRI+    K+ S+ DDFWS+S  D++ S +QSQRS SSI
Sbjct: 21  GCFGCCAKPTPIIAVDEPSKGLRIQGRAVKKPSVSDDFWSTSTCDLENSAIQSQRSVSSI 80

Query: 61  SALNQPFDPSANAGSTSNPSEFVNYGLLLWKQTRQQWLANKRSPNKKQVR-EPTIRWNAT 119
           S  N   +       TS+ SEFVN G LLW+Q+R QW  N  S  K   R E  + WNAT
Sbjct: 81  SVSNA--NLCIGTSGTSSTSEFVNQGFLLWQQSRLQWTGNNNSRGKTHYRLEHRLSWNAT 138

Query: 120 YENLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           YE LLGS  PF RPIPL+EMVDFLVD+WEQEGLYD
Sbjct: 139 YEGLLGSRNPFRRPIPLSEMVDFLVDIWEQEGLYD 173


>30078.m002268 conserved hypothetical protein
          Length = 105

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 8/93 (8%)

Query: 70  SANAGSTSNPSE--------FVNYGLLLWKQTRQQWLANKRSPNKKQVREPTIRWNATYE 121
           + + G T +P++        FVN+  + W + R+QW+ ++   ++K  REP + W ATYE
Sbjct: 13  NGHLGGTEDPNKENCTEKDVFVNHAEITWHKKRKQWVGDRSQKSQKMPREPIMSWTATYE 72

Query: 122 NLLGSNKPFPRPIPLAEMVDFLVDVWEQEGLYD 154
           +LL S++PF +PIPLAEMVDFLVD+W +EGLYD
Sbjct: 73  DLLCSSEPFQQPIPLAEMVDFLVDIWHEEGLYD 105


>29745.m000363 conserved hypothetical protein
          Length = 112

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 69  PSANAGSTSNPSEFVNYGLLLWKQTRQQWLANKRSPNKKQVREPTIRWNATYENLLGSNK 128
           P    GS S  S FVN+    W ++R++W+  +   +K   ++P I W+ TYE+LL +N+
Sbjct: 28  PPEKEGSVST-SVFVNHAANAWHESRRKWIGEQSQQSKTMTKDPIISWSTTYEDLLSTNE 86

Query: 129 PFPRPIPLAEMVDFLVDVWEQEGLYD 154
           PF  PIPL EMVDFL+D+W+ EGL+D
Sbjct: 87  PFSEPIPLPEMVDFLIDIWQDEGLFD 112